Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01728 and RBAM_010370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:25
# Commandline: needle
# -asequence dna-align/BSNT_01728___hemY.1.9828.seq
# -bsequence dna-align/RBAM_010370___hemY.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01728___hemY-RBAM_010370___hemY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01728___hemY-RBAM_010370___hemY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01728___hemY
# 2: RBAM_010370___hemY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1455
# Identity: 1097/1455 (75.4%)
# Similarity: 1097/1455 (75.4%)
# Gaps: 63/1455 ( 4.3%)
# Score: 4121.5
#
#
#=======================================
BSNT_01728___ 1 ATGAGTGACGGCAAAAAACATGTAGTCATCATCGGCGGCGGCATTACCGG 50
|||||||.||..|||||||||.|.||||||||||||||||||||.||.||
RBAM_010370__ 1 ATGAGTGGCGATAAAAAACATCTGGTCATCATCGGCGGCGGCATAACGGG 50
BSNT_01728___ 51 TTTAGCCGCCGCCTTCTATATGGAAAAAGAAATCAAAGAAAAGAATCTGC 100
.|||||||||||||||||.|||||||||||||||||.|||||..|.||||
RBAM_010370__ 51 ATTAGCCGCCGCCTTCTACATGGAAAAAGAAATCAAGGAAAAACAGCTGC 100
BSNT_01728___ 101 CGCTTGAAATGACGCTTGTTGAGGCAAGTCCGAGAGTCGGCGGAAAAATC 150
|||||||..|.||.||..||||.||..|.|||||||..|||||.|||||.
RBAM_010370__ 101 CGCTTGAGGTCACCCTGATTGAAGCGGGCCCGAGAGCGGGCGGCAAAATT 150
BSNT_01728___ 151 CAGACTGTCA--AGAAGGACGGCTATATCATCGAAAGAGGGCCAGACTCA 198
||||| .|| |.||.||||||||.|||||.||..|.|||||.||.||.
RBAM_010370__ 151 CAGAC--GCAGCATAAAGACGGCTACATCATTGAGCGGGGGCCGGATTCT 198
BSNT_01728___ 199 TTTCTGGAACGAAAGAAAAGCGCCCCGCAGCTTGTTAAAGACTTAGGTCT 248
|||.|||||.|.||.||||||||.||||||||.||.||.||.||.||.||
RBAM_010370__ 199 TTTTTGGAAAGGAAAAAAAGCGCGCCGCAGCTCGTCAAGGATTTGGGGCT 248
BSNT_01728___ 249 TGAGCATTTGCTTGTCAACAATGCGACCGGACAATCCTATGTGCTTGTAA 298
|||||||.||||.|||||||||||||||||.||.||.||.|||||.||.|
RBAM_010370__ 249 TGAGCATCTGCTCGTCAACAATGCGACCGGCCAGTCTTACGTGCTCGTCA 298
BSNT_01728___ 299 ACCGCACCCTGCATCCAATGCCGAAGGGCGCTGTAATGGGGATACCGACA 348
||...||.||.|||||.||||||||||||||.||.|||||.||.|||||.
RBAM_010370__ 299 ACGAGACGCTCCATCCGATGCCGAAGGGCGCGGTGATGGGCATTCCGACC 348
BSNT_01728___ 349 AAAATTGCGCCGTTTGTTTCTACGGGTCTGTTTTCTTTGTCTGGGAAGGC 398
|||||.||.|||||..|.||.||.|||.|.||||||.|..|.||.|||||
RBAM_010370__ 349 AAAATCGCTCCGTTCATCTCCACCGGTTTATTTTCTGTTCCCGGAAAGGC 398
BSNT_01728___ 399 CAGAGCTGCAATGGATTTCATCCTGCCTGCAAGCAAAACAAAGGATGATC 448
..|.||.||..|.||.||..||||||||||.||||||.|.|||||.||||
RBAM_010370__ 399 GCGGGCGGCGCTTGACTTTGTCCTGCCTGCGAGCAAACCGAAGGAAGATC 448
BSNT_01728___ 449 AGTCATTGGGAGAATTCTTCCGCAGACGTGTCGGAGATGAAGTGGTCGAG 498
||||..||||.|||||.|||||||||||.|||||.||.|||||.||.|||
RBAM_010370__ 449 AGTCTCTGGGTGAATTTTTCCGCAGACGCGTCGGTGACGAAGTCGTTGAG 498
BSNT_01728___ 499 AACTTAATCGAGCCGCTTCTATCAGGGATCTATGCAGGCGACATTGACAA 548
||.|||||.||.|||||..||||||||||.|||||.||.||.|||||.||
RBAM_010370__ 499 AATTTAATAGAACCGCTATTATCAGGGATTTATGCCGGAGATATTGATAA 548
BSNT_01728___ 549 GCTCAGCCTGATGTCGACATTCCCGCAATTTTACCAGACAGAACAAAAGC 598
|||.|||||.|||||.||.||.||||||||.||.|||||.||.||.||||
RBAM_010370__ 549 GCTGAGCCTCATGTCCACGTTTCCGCAATTCTATCAGACTGAGCAGAAGC 598
BSNT_01728___ 599 ATAGAAGCCTGATTCTCGGCATGAAAAAAACAAGGCCTCAAGGC--TCAG 646
|.|||||||||||||||||||||||||||.|..|.||.|| || ||.|
RBAM_010370__ 599 ACAGAAGCCTGATTCTCGGCATGAAAAAATCGCGTCCGCA--GCCTTCGG 646
BSNT_01728___ 647 GCCAGCAGCTGACGGCAAAGAAGCAAGGCCAGTTCCAGACTTTGTCAACC 696
|.||||||||||||||.||.|||||.||||||||....||..||.|.||.
RBAM_010370__ 647 GACAGCAGCTGACGGCTAAAAAGCAGGGCCAGTTTTTAACGCTGACGACA 696
BSNT_01728___ 697 GGATTGCAAACCCTTGTTGAAGAGATCGAAAAGCAGTTAAAGCTGACGAA 746
||..|.|||||..|.||.||.|||.|.|||||||||.|.|.||||||.||
RBAM_010370__ 697 GGGCTTCAAACGTTGGTGGAGGAGCTGGAAAAGCAGCTTACGCTGACAAA 746
BSNT_01728___ 747 GGTGTAT-AAAGGCACAAAAGTGACCAAGCTCAGCCGTG----GCGGCTC 791
|||| || |||||.||.|||||.|||.|..||.||||.| |..|
RBAM_010370__ 747 GGTG-ATGAAAGGAACGAAAGTCACCCATATCGGCCGCGAGGAGAAG--- 792
BSNT_01728___ 792 TGGTTACT------CGCTCGAATTGGATAACGGC---GTCACACTTGATG 832
||.|||| ||| |.||||||||| || .||..|||
RBAM_010370__ 793 -GGATACTCCGTGACGC------TTGATAACGGCAAAGT---GCTCTATG 832
BSNT_01728___ 833 CTGATTCAGTA---ATTGTGACTGCTCCGCATAAAGCGGCTGCGGGAATG 879
|.|| ||.| ||||||||.||.|||||||||||.||.|||..||||
RBAM_010370__ 833 CGGA---AGGATGCATTGTGACAGCCCCGCATAAAGCCGCGGCGAAAATG 879
BSNT_01728___ 880 CTTTCTGAGCTTCCTGCCATTTCTCATTTGAAAAATATGCACTCCACATC 929
||||||||.||.||.||..||||...|.|.|||.|.|||||.||.||.||
RBAM_010370__ 880 CTTTCTGATCTGCCGGCGGTTTCATGTCTTAAAGACATGCATTCTACGTC 929
BSNT_01728___ 930 GGTGGCAAATGTCGCTTTAGGTTTCCCTGAAGGCTCCGTCGAGATGGAGC 979
.||.||.||.|||||.||||||||.|||||.||..|||||.|||||||||
RBAM_010370__ 930 CGTTGCCAACGTCGCCTTAGGTTTTCCTGAGGGAGCCGTCAAGATGGAGC 979
BSNT_01728___ 980 ATGAGGGCACGGGTTTTGTTATTTCAAGAAACAGTGACTTTGCGATCACT 1029
||||.||.|||||.||.|||||.|||||||||||.|||||..|.|||||.
RBAM_010370__ 980 ATGAAGGTACGGGATTCGTTATCTCAAGAAACAGCGACTTCTCCATCACG 1029
BSNT_01728___ 1030 GCCTGTACGTGGACGAATAAAAAATGGCCGCACGCAGCTCCGGAAGGCAA 1079
|||||.||.||||||||||||||||||||||||||.||.|||||.|||||
RBAM_010370__ 1030 GCCTGCACATGGACGAATAAAAAATGGCCGCACGCGGCGCCGGAGGGCAA 1079
BSNT_01728___ 1080 AACGCTGCTTCGGGCATATGTCGGAAAAGCTGGAGACGAATCCATTGTCG 1129
||||||.||..||||.||.||||||||.||.|||||.||||||||.||.|
RBAM_010370__ 1080 AACGCTTCTCAGGGCGTACGTCGGAAAGGCCGGAGATGAATCCATCGTAG 1129
BSNT_01728___ 1130 ATCTATCAGATAATGACATTATCAACATTGTGTTAGAAGACTTAAAGAAA 1179
||||.||||||||.||.||.||.||.||.||..|.|||||.||.||.|||
RBAM_010370__ 1130 ATCTTTCAGATAACGAGATCATTAAAATCGTAATGGAAGATTTGAAAAAA 1179
BSNT_01728___ 1180 GTCATGAACATAAACGGCGAGCCGGAAATGACATGTGTCACCCGATGGCA 1229
||.|||||.|||||.||.||.|||||||||||.|||||.|||||.|||.|
RBAM_010370__ 1180 GTAATGAAAATAAATGGTGAACCGGAAATGACCTGTGTGACCCGCTGGAA 1229
BSNT_01728___ 1230 TGAAAGCATGCCGCAGTACCATGTCGGCCATAAGCAGCGTATCAAGGAGC 1279
.||||||||||||||.||||||||||||||||||.||||.|||||.|||.
RBAM_010370__ 1230 CGAAAGCATGCCGCAATACCATGTCGGCCATAAGGAGCGCATCAAAGAGT 1279
BSNT_01728___ 1280 TGCGTGAAGCACTTGCATCTGCGTATCCGGGTGTTTATATGACAGGCGCT 1329
|..|.||.||.||...|.||.|.||||||||.||.||...|||.|||||.
RBAM_010370__ 1280 TCAGAGATGCGCTGAAAGCTTCCTATCCGGGCGTATACGCGACGGGCGCG 1329
BSNT_01728___ 1330 TCTTTCGAAGGTGTCGGCATTCCCGACTGCATTGATCAAGGAAAAGCTGC 1379
|||||||||||.||.|||||.||||||||.||.||.||.||||||||.||
RBAM_010370__ 1330 TCTTTCGAAGGGGTGGGCATCCCCGACTGTATCGACCAGGGAAAAGCCGC 1379
BSNT_01728___ 1380 CGTGTCTGACGCGCTTACCTATTTATT----------CAGC--------- 1410
|||.|..||..|.||..|.|||||||| ||||
RBAM_010370__ 1380 CGTATACGATTCACTGGCTTATTTATTTGAAACGTACCAGCCTCCGTTAT 1429
BSNT_01728___ 1411 --TAA 1413
|||
RBAM_010370__ 1430 CGTAA 1434
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