Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01724 and RBAM_010340
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:25
# Commandline: needle
# -asequence dna-align/BSNT_01724___pbpF.1.9828.seq
# -bsequence dna-align/RBAM_010340___pbpF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01724___pbpF-RBAM_010340___pbpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01724___pbpF-RBAM_010340___pbpF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01724___pbpF
# 2: RBAM_010340___pbpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2166
# Identity: 1634/2166 (75.4%)
# Similarity: 1634/2166 (75.4%)
# Gaps: 45/2166 ( 2.1%)
# Score: 6009.5
#
#
#=======================================
BSNT_01724___ 1 ATGTTTAAGATAAAGAAAAAGAAACTTTTTATACC-----TATCATTATT 45
|||.| ||.|||||||||.|.|.|.|||||.|| || |||
RBAM_010340__ 1 ATGCT---GAAAAAGAAAAAAAGATTCTTTATTCCGGCTGTA-----ATT 42
BSNT_01724___ 46 TTAGTGTTAACTGCTTTTCTCGCTTTAATAGGATATATT-TCAATTATTT 94
...|.|..|||.|||||||||||.|||||.|||||.||| || |||||.|
RBAM_010340__ 43 GCGGCGGCAACCGCTTTTCTCGCGTTAATCGGATACATTATC-ATTATAT 91
BSNT_01724___ 95 TTCTCGGCCATTATGTCATAGATGAAAAAAAGCTTATTCTTCATGCTTCT 144
|||||||||||||||||||.||||||||.||..|.||.||.||.||.|||
RBAM_010340__ 92 TTCTCGGCCATTATGTCATCGATGAAAAGAAATTAATACTGCACGCATCT 141
BSNT_01724___ 145 TCAAAAATTGTTGATCAAAACGGAGATGAGGTTGCAAGCCTGTATACAGA 194
||||||||.||.|||||||||||.|||||..|.||.|||||.|||||.||
RBAM_010340__ 142 TCAAAAATCGTCGATCAAAACGGTGATGAAATCGCGAGCCTCTATACGGA 191
BSNT_01724___ 195 AAATCGCGAGCCGGTCTCGATCAATGAGATTCC-AAAGCAGGTCAGAGAA 243
|||||||||||||||.||.||..|..||.|||| .||| |.||.|||||.
RBAM_010340__ 192 AAATCGCGAGCCGGTATCCATTCAGCAGGTTCCGGAAG-ATGTGAGAGAT 240
BSNT_01724___ 244 GCGTTTATCGCTGTTGAGGATAAAAGGTTCTATGAGCATCACGGCATTGA 293
||.||||||||.|||||.||||||.||||.||.||.||||||||||||||
RBAM_010340__ 241 GCCTTTATCGCCGTTGAAGATAAACGGTTTTACGAACATCACGGCATTGA 290
BSNT_01724___ 294 TGCAAAATCTGTCGGAAGGGCAGTGTATCGCGATATATTAGCAGGCGGAA 343
||..||.||||||||..||||.||||..||.|||.|.|||||||||||.|
RBAM_010340__ 291 TGTGAAGTCTGTCGGCCGGGCGGTGTTCCGGGATGTTTTAGCAGGCGGCA 340
BSNT_01724___ 344 AGGTGGAAGGCGGAAGCACGATCACCCAGCAGCTTGCCAAAAATATTTTT 393
|||||||.|||||.||||||||||||||||||||.||.|||||.||||||
RBAM_010340__ 341 AGGTGGAGGGCGGCAGCACGATCACCCAGCAGCTGGCGAAAAACATTTTT 390
BSNT_01724___ 394 CTGACACATGACAAAACGTTTCTAAGAAAAACAAAAGAAGTGATCATTGC 443
|||||.|||||.|||||.|||.|..|.||.||.||.|||||.||.||.||
RBAM_010340__ 391 CTGACCCATGATAAAACATTTTTGCGCAAGACGAAGGAAGTCATTATCGC 440
BSNT_01724___ 444 GATCAATCTTGAACGGGATTACAGCAAGGACAAGCTGCTTGAAATGTATT 493
.|||||||||||.||.||||||||||||||||||||||||||||||||..
RBAM_010340__ 441 CATCAATCTTGAGCGTGATTACAGCAAGGACAAGCTGCTTGAAATGTACC 490
BSNT_01724___ 494 TAAATCAGCTTTACTTCGGACATGGGGTTTACGGCATACAAGCGGCGTCC 543
|.||.||||||||.|||||.|||||.|||||||||||.|||||.||||||
RBAM_010340__ 491 TGAACCAGCTTTATTTCGGCCATGGCGTTTACGGCATTCAAGCCGCGTCC 540
BSNT_01724___ 544 CACTATTATTTTAATAAAGAAGTAAAAGATTTGACTGTATCTGAAGGCGC 593
|||||.||.|||||||||||||||||||||||.||.||..|.|||||.||
RBAM_010340__ 541 CACTACTACTTTAATAAAGAAGTAAAAGATTTAACCGTTGCGGAAGGAGC 590
BSNT_01724___ 594 TGTTTTGGCCGCTATTCCGAAGGCGCCTTCTACGTACTCTCCAATTTTGC 643
.|||.||||.||.||||||||||||||.|||...||.||.||.|||..||
RBAM_010340__ 591 CGTTCTGGCAGCGATTCCGAAGGCGCCATCTCTTTATTCGCCGATTCAGC 640
BSNT_01724___ 644 ACCCTGATAAAAATAAGGAGCGGCGTGATACAATTCTAGGCATGATGAAT 693
|.||.|||||||||||.||.||.||.|||||.|||||.|..||||||||.
RBAM_010340__ 641 ATCCGGATAAAAATAAAGAACGCCGCGATACGATTCTTGCAATGATGAAC 690
BSNT_01724___ 694 GACCAAGGCTATATCAGTGCGAAAGAGGCTGTCACCGCACAGGGCCGAAC 743
|||||||||||||||||.||.||.||.||.||||..||.||||||||.||
RBAM_010340__ 691 GACCAAGGCTATATCAGCGCCAAGGAAGCCGTCAGAGCCCAGGGCCGGAC 740
BSNT_01724___ 744 GCTTGGACTGCACGTGAAG-AAACAGTCGGAAACACCTTGGTTTGACAGC 792
..|.||.||..|.||.||| ||||| ||.|||||.||||||||||||||.
RBAM_010340__ 741 ATTGGGGCTTAATGTCAAGAAAACA-TCAGAAACGCCTTGGTTTGACAGT 789
BSNT_01724___ 793 TACATTGACCTTGTGATCAAAGAGGCGGAAGACAAGTATTCCATTTCTGG 842
||.|||||.|||||.|||||.||||||||||||...|||||.||.||.||
RBAM_010340__ 790 TATATTGATCTTGTCATCAAGGAGGCGGAAGACCGTTATTCGATGTCAGG 839
BSNT_01724___ 843 GGAGCAGCTTCTTCAAGGAGGATACACGATCAAGGTGCCGCTCGATTCGA 892
.||.|||||.||||||||.||.||.||||||..|..|.|.||.|||||.|
RBAM_010340__ 840 TGAACAGCTGCTTCAAGGCGGTTATACGATCCGGACGTCACTTGATTCCA 889
BSNT_01724___ 893 AGCTGCAGAAAACGGCTTACCAGGTGATGAAAGAGGGTAGCTATTATCCC 942
||||||||||||||||.|||....|.|||||.||..|..||||||.|||.
RBAM_010340__ 890 AGCTGCAGAAAACGGCATACACCCTCATGAAGGAAAGCGGCTATTTTCCG 939
BSNT_01724___ 943 GGAACAGATCAGAATGCCGAGGGAAGCGCGGTCTTTATTAATAACAAGAC 992
||.||.||||||...||.|||||||||||.|||||||||.||||.||.||
RBAM_010340__ 940 GGGACGGATCAGGCGGCAGAGGGAAGCGCCGTCTTTATTGATAATAAAAC 989
BSNT_01724___ 993 AGGCGGTGTAGAAGCGGCCATCGGCGGAAGGGATTAC---ACATCCAAAG 1039
.||.||.||....|||||..||||||||.|.||.||| ||| ||||
RBAM_010340__ 990 CGGAGGCGTGCGCGCGGCGGTCGGCGGACGCGACTACGTGACA---AAAG 1036
BSNT_01724___ 1040 GATATAACCGTGTCACAGCTGTCCGCCAGCCGGGTTCCACATTTAAGCCG 1089
||||.|||.|.||.||.||....||.||||||||.||.||.|||||||||
RBAM_010340__ 1037 GATACAACAGGGTTACGGCGAAGCGGCAGCCGGGCTCAACGTTTAAGCCG 1086
BSNT_01724___ 1090 CTTGCTGTATACGGACCGGCGATGCAGGAAAAGAAATTTAAGCCATATTC 1139
.||||.||||||||.||.||.|||||||||.|.||.||.||.||.|||||
RBAM_010340__ 1087 ATTGCCGTATACGGGCCCGCCATGCAGGAAGACAAGTTCAAACCGTATTC 1136
BSNT_01724___ 1140 TCTATTGAAGGATGAGTTGCAGTCCTACGGAGATTATACGCCGAAAAACT 1189
.||..|..|.||..|..||..||||||||..|..|||...||||||||.|
RBAM_010340__ 1137 GCTTCTCCAAGACAAACTGACGTCCTACGACGGGTATGAACCGAAAAATT 1186
BSNT_01724___ 1190 ACGACAGCCGGTATGAGGGCGAAGTCACTATGTCTGACGCCATTACGTAC 1239
|.|||.|.|.|||..||||.|||||.||.|||...||.||.||.||.|||
RBAM_010340__ 1187 ATGACGGACAGTACAAGGGGGAAGTGACGATGCAGGATGCGATCACTTAC 1236
BSNT_01724___ 1240 AGCAAAAACGCGCCGGCTGTCTGGACGCTGAATGAGATCGGCGTCGAAAC 1289
||||.|||.|||||.|||||||||||..||||..||||||||||.||.||
RBAM_010340__ 1237 AGCATAAATGCGCCCGCTGTCTGGACATTGAAGCAGATCGGCGTAGATAC 1286
BSNT_01724___ 1290 AGGAAAATCTTAT-TTGA-AAGCAAACGGCATTGATATCCCTGATGAAGG 1337
.||||||||.||| |||| || |||||||||..|.||..||||..|.||
RBAM_010340__ 1287 GGGAAAATCGTATCTTGAGAA--AAACGGCATGAACATTTCTGACAACGG 1334
BSNT_01724___ 1338 ACTTGCTCTCGCTCTAGGAGGCTTGGAAAAAGGCGTTTCGCCGCTCCAGC 1387
|||.||..|.||.||.||.||..||..|.|||||||..|.|||||.||||
RBAM_010340__ 1335 ACTCGCGATTGCGCTTGGCGGTCTGTCAGAAGGCGTCACCCCGCTTCAGC 1384
BSNT_01724___ 1388 TTGCCGGCGCGTTTCATACATTTGCCGCGAATGGAACGTATACGGAACCT 1437
|||||||.||.|.||||||.|||||.||.||.||||.|||||||.|.||.
RBAM_010340__ 1385 TTGCCGGAGCTTATCATACCTTTGCGGCAAACGGAATGTATACGAAGCCA 1434
BSNT_01724___ 1438 TTCTTTATCTCGAGCATAATAGATGAAGACGGAGAAACAATAGCCGATCA 1487
||.|||||...||.|||.|..||.||||||||||||||..||.|||..|.
RBAM_010340__ 1435 TTTTTTATAGAGAACATCACGGACGAAGACGGAGAAACGTTATCCGGGCC 1484
BSNT_01724___ 1488 TAAAGA--GGAAGGAAAGCGGGTTTTCAGCAAGCAGACGTCTTGGAATAT 1535
||||.| |.|| ||.|||.||.||||||...||||||.|.||||||||
RBAM_010340__ 1485 TAAAAACGGCAA--AACGCGCGTCTTCAGCGGACAGACGGCATGGAATAT 1532
BSNT_01724___ 1536 GACGAGAATGCTGCAGCAGGTAGTCAAAAAGGGAACGGC--CACGTCCGG 1583
||||||||||||.||||||||.||.|||.|.|||||.|| ||| ..||
RBAM_010340__ 1533 GACGAGAATGCTTCAGCAGGTCGTAAAAGAAGGAACCGCTTCAC--AAGG 1580
BSNT_01724___ 1584 CGCCTATCACGGCGACCTGGCGGGAAAAACAGGTTCTACATCTTATACAG 1633
|..||||||.||.|||||||||||.|||||.||..|.||..|.|.|.|.|
RBAM_010340__ 1581 CAGCTATCAAGGTGACCTGGCGGGGAAAACCGGCACGACCACATTTCCCG 1630
BSNT_01724___ 1634 GCGTCTCCGGCGCGACAAAGGACGCTTGGTTTGCAGGCTATACGCCGAAA 1683
||.||.|||||||||||||||||||.||||||||.||.||.||.||...|
RBAM_010340__ 1631 GCATCCCCGGCGCGACAAAGGACGCCTGGTTTGCGGGATACACTCCCGGA 1680
BSNT_01724___ 1684 ATAACCGGGGCAGTCTGGATGGGCTATGACAAAACGGATCAAAACCATTA 1733
.|.||.||.||.|||||||||||||||||||||||||||.|||.||||||
RBAM_010340__ 1681 CTGACGGGAGCCGTCTGGATGGGCTATGACAAAACGGATAAAACCCATTA 1730
BSNT_01724___ 1734 TTTGAAAGCCGGGAGCTCATACCCGACGCGGCTGTTTAAGGATATTTTGA 1783
..||||||.|||.|||..|||||||....|.||.|||||.|.|||..|.|
RBAM_010340__ 1731 CCTGAAAGGCGGAAGCCAATACCCGGTCAGACTCTTTAAAGCTATCGTTA 1780
BSNT_01724___ 1784 CACAGGCAGGAGAAA----CCGGTCATGTGTTCACAAAGCCTAAAAACAT 1829
||.|.||.||.|||| ||||.|| ||||.|||||||.||||..|
RBAM_010340__ 1781 CAAAAGCGGGTGAAAACGGCCGGACA----TTCAAAAAGCCTGAAAATGT 1826
BSNT_01724___ 1830 TAAAGACCTGGAAAGCCCGATTGAGTTGAAGCCGGTCAAAACACTCACAG 1879
.||.||.||||..||||||||||||.||.||.||||.||..|.||..|.|
RBAM_010340__ 1827 GAAGGAACTGGGCAGCCCGATTGAGCTGGAGGCGGTAAAGTCCCTGTCGG 1876
BSNT_01724___ 1880 CCGATTACACATTTAAAGCAGCGGGACTCTTTACTATTGAATTAAAGTGG 1929
||..|||.||||||||.||...||||||..||||..||.|||||||.|||
RBAM_010340__ 1877 CCCGTTATACATTTAAGGCGATGGGACTGATTACGGTTCAATTAAAATGG 1926
BSNT_01724___ 1930 GACGCTCAAGAGGATGATCGGGCCGTATACAGAATTTATGTAAACAAGGA 1979
||...||||.||||||||||||..||.|||.||||.||||..||.||.||
RBAM_010340__ 1927 GATATTCAAAAGGATGATCGGGTTGTTTACCGAATATATGAGAAGAAAGA 1976
BSNT_01724___ 1980 CGGCGAGGAGACGCTTCTTGATTCGGTTGAAGGGAAGGGAAGCTATGAAA 2029
|||..|.||.|.||||||.||||||||..||||.||.||.||||.|||.|
RBAM_010340__ 1977 CGGAAAAGACAAGCTTCTGGATTCGGTGAAAGGAAAAGGCAGCTTTGACA 2026
BSNT_01724___ 2030 TTCCTTATGCCAACTTATTTTCGGGCGCGTCTTATAAAATTGTGCCTTAT 2079
|.||.||||||||..|.|||||.||.||.||.||.|||.|.||.||.|||
RBAM_010340__ 2027 TACCGTATGCCAATCTGTTTTCAGGGGCTTCATACAAAGTCGTTCCATAT 2076
BSNT_01724___ 2080 AATACACAGACAAAAAGAGAAGGGGAAGGAACCGATTACGTTCAGCCAAA 2129
|||.|||||||..|...||||||.||.|||||.||.|||||||||||.||
RBAM_010340__ 2077 AATTCACAGACGGATCAAGAAGGAGAGGGAACGGAATACGTTCAGCCGAA 2126
BSNT_01724___ 2130 ATTGTTTTCCTCTTAA 2145
..|.|||||.||||||
RBAM_010340__ 2127 GCTTTTTTCTTCTTAA 2142
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