Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01718 and RBAM_010310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:24
# Commandline: needle
# -asequence dna-align/BSNT_01718___yhaA.1.9828.seq
# -bsequence dna-align/RBAM_010310___yhaA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01718___yhaA-RBAM_010310___yhaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01718___yhaA-RBAM_010310___yhaA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01718___yhaA
# 2: RBAM_010310___yhaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1223
# Identity: 883/1223 (72.2%)
# Similarity: 883/1223 (72.2%)
# Gaps: 67/1223 ( 5.5%)
# Score: 3007.5
#
#
#=======================================
BSNT_01718___ 1 TTGTCCATATCCACACTGCAGAAAGAG-ATAAACAAACAGCTCGAC-AGC 48
|||.|..||.|.|||||.|| |||.|| .|||||...|||||.||| .||
RBAM_010310__ 1 TTGACGTTAACGACACTTCA-AAAAAGCTTAAACGCTCAGCTTGACGGGC 49
BSNT_01718___ 49 TGTTTTGAAGAAATGGTTGAGATCAGGCGCCATATTCATATGTATCCTGA 98
|| |.|||.|||||||||||.||||||||.||..||||.|||.||||.||
RBAM_010310__ 50 TG-TATGAGGAAATGGTTGAAATCAGGCGTCACCTTCACATGAATCCCGA 98
BSNT_01718___ 99 GCTCTCATTTCAAGAAGAAAAAACCGCC-GCATTTATTGCTTCCTATTAT 147
||..||.||| |||.||||||||.|.|| ||.||.||.||.||.|.||||
RBAM_010310__ 99 GCCATCCTTT-AAGGAGAAAAAAACACCGGCGTTCATCGCCTCATTTTAT 147
BSNT_01718___ 148 GAGTCGTTAGGAGTCCCAATCCGCACGAACGTCGGCGGCAGAGGGGTTTT 197
||...|.|.||.||.||.|||||.|||||.|||||.||||..||.||...
RBAM_010310__ 148 GAAAAGCTCGGCGTTCCCATCCGGACGAATGTCGGGGGCAACGGTGTCAC 197
BSNT_01718___ 198 AGCATATATAGAAGGAAGCGAACCCGGCCCTACAGTCGCTTTGAGGGCCG 247
|||.|||||.|||||.||.|||||.||.||....||.||..|.||.||.|
RBAM_010310__ 198 AGCCTATATTGAAGGGAGTGAACCGGGACCGGTCGTGGCACTCAGAGCTG 247
BSNT_01718___ 248 ACTTTGACGCTCTCCCCATTCAAGATGAAAAAGATGTCCCTTACGCCTC- 296
|.|||||||||.|.||.||.||.||||||||||||||.||.||.||.||
RBAM_010310__ 248 ATTTTGACGCTTTGCCGATACAGGATGAAAAAGATGTGCCCTATGCTTCA 297
BSNT_01718___ 297 CAAAGTGCCTGGTGTCATGCATGCATGCGGCCACGACGGCCACACCGCAG 346
|||| |.||.||.||||||||.||.|||||.||.|||||||||||.||.|
RBAM_010310__ 298 CAAA-TTCCCGGCGTCATGCACGCCTGCGGGCATGACGGCCACACGGCGG 346
BSNT_01718___ 347 CTCTTCTCGCAGTGGCCAAGGTCCTTCACCAAAACAGACATGAACTGAAG 396
||||.||.||.||.|..||.||.||..|||..|||.|..|..|||||||.
RBAM_010310__ 347 CTCTGCTTGCGGTCGGAAAAGTGCTGTACCGCAACCGGGAAAAACTGAAA 396
BSNT_01718___ 397 GGAACATTTGTGATGATCCACCAGCATGCAGAAGAATATTATCCGGGAGG 446
||..||||||||||||||||.|||||.||.||.||||..|.|||.||.||
RBAM_010310__ 397 GGGTCATTTGTGATGATCCATCAGCACGCCGAGGAATTATCTCCCGGCGG 446
BSNT_01718___ 447 CGCAAAGCCAATGATTGATGACGGCTGTCTCGAAAACGCGGATGTGATAT 496
.|||||..||||||||||.||.|||||.|||||..|.|..||||..||.|
RBAM_010310__ 447 AGCAAAAGCAATGATTGAGGATGGCTGCCTCGAGCATGTCGATGCCATTT 496
BSNT_01718___ 497 TCGGCACTCATCTTTGGGCAACTG-AGCCGCTCGGAACCATTCTT-TGCC 544
||||||||||.||||||||.|||| |.||||..||| |..|||| ||||
RBAM_010310__ 497 TCGGCACTCACCTTTGGGCGACTGAACCCGCCGGGA--CGGTCTTATGCC 544
BSNT_01718___ 545 GCCCCGGCGCCGTAATGGCGGCGGCGGACCGATTTACGATTAAAGTCTTC 594
||||.|||||.||.|||||.||.||.|||.|.|||||||||||||||.||
RBAM_010310__ 545 GCCCGGGCGCAGTGATGGCCGCCGCTGACGGCTTTACGATTAAAGTCATC 594
BSNT_01718___ 595 GGAAAGGGCGGCCACGGCGCTCATCCGCATGATACTAAAGACGCCGTCCT 644
||.||.||||||||||||||...|||.||.|||||.||.||||||||..|
RBAM_010310__ 595 GGGAAAGGCGGCCACGGCGCGATTCCTCACGATACGAAGGACGCCGTTTT 644
BSNT_01718___ 645 GATCGGTTCGCAAATCGTTAC--CTCTTTGCAGCACATTGTCAGCCGCAA 692
.|||||.||.||||||||.|| ||||| |||||.||.||||||||...
RBAM_010310__ 645 AATCGGCTCACAAATCGTCACGGCTCTT--CAGCATATCGTCAGCCGGCG 692
BSNT_01718___ 693 AGTCAATCCGATTCAATCCGCCGTCATTTCGACAGGCTCCTTCATCGCCG 742
.||.||||||.|.||..|.||||||||.||..|.|||||.||||||||.|
RBAM_010310__ 693 GGTAAATCCGGTGCAGCCGGCCGTCATCTCAGCCGGCTCGTTCATCGCTG 742
BSNT_01718___ 743 ACAATCCGTTTAATGTCATCGCAGACCAAGCAGTACTCATC-GGCACAGC 791
|.|||||||||||||..||.||.||.||.||||| |..||| |||||.|.
RBAM_010310__ 743 AAAATCCGTTTAATGCGATTGCCGATCAGGCAGT-CATATCAGGCACCGT 791
BSNT_01718___ 792 GCGTTCTTTTGATGAAAATGTCCGGGACATTCTGGAGAAAGAAATTGAAG 841
.||.||.|||||.||||.|||.||...|.|.||.||...||||||.||||
RBAM_010310__ 792 CCGCTCGTTTGACGAAAGTGTGCGCAGCCTGCTCGAAGCAGAAATAGAAG 841
BSNT_01718___ 842 CGGTTGTAAAAGGAATATGCAGCATGCACGGCGCGTCCTATGAGTACACC 891
|.||.|||||||||||.||...|||||||..|||.||||||||.|| .|.
RBAM_010310__ 842 CCGTCGTAAAAGGAATCTGTTCCATGCACTCCGCTTCCTATGAATA-TCG 890
BSNT_01718___ 892 TATGAA-CAGGGTTATCCGGCGGTTGTGAACCATCCTGCCGAAACGAGC- 939
|.|.|| |..||||||||.||.||.||.||.|||||||..|||.| |||
RBAM_010310__ 891 TTTCAAGCGCGGTTATCCCGCCGTCGTTAATCATCCTGAGGAAGC-AGCG 939
BSNT_01718___ 940 CACTTGGTGAGCA-CCGCAAAGAATACCGAGGGCGTTCA-GCAGGTCATT 987
|||..||.| ||| |||||..|.|.||.||.|||| ||| |.|||||.||
RBAM_010310__ 940 CACGCGGCG-GCAGCCGCAGCGGAAACAGATGGCG-TCACGAAGGTCGTT 987
BSNT_01718___ 988 GACGGTGAACCGCAAATGGGCGGCGAGGATTTTTCTTATTA-------CT 1030
||.||.||.|||||.||||.|||.|||||||||||.||||| |.
RBAM_010310__ 988 GAAGGAGAGCCGCAGATGGCCGGAGAGGATTTTTCCTATTATCTGCAGCA 1037
BSNT_01718___ 1031 TACAAAACGTGAAAGGCACTTTTTTCTTTACAGGTGCCGCT--------C 1072
|||| ||||||.|.|||||||||||.||.|||||| |
RBAM_010310__ 1038 TACA-------AAAGGCGCATTTTTCTTTACGGGCGCCGCTTTAGAAAAC 1080
BSNT_01718___ 1073 CCGAACAGCCAGATCGAGTTTATTCCCACCACCATCCGAAATTTGATATC 1122
.||.| |.||| |||||.|.||.|||||.||||||||||||.|.
RBAM_010310__ 1081 GCGGA-AACCA-------TTTATCCTCATCACCACCCGAAATTTGATTTT 1122
BSNT_01718___ 1123 AACGAAAAAGCCATGCTGACAGCGGCCAAGGTCCTTGCCGGCGCTGCGAT 1172
||.||||||||.||||||||.||.||||||||.|||..||||||.|||.|
RBAM_010310__ 1123 AATGAAAAAGCGATGCTGACGGCCGCCAAGGTGCTTATCGGCGCCGCGGT 1172
BSNT_01718___ 1173 CACCTATC----ATCAGCTATAA 1191
.|.|||.| || ||
RBAM_010310__ 1173 GAGCTACCCCCGAT-AG------ 1188
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