Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01716 and RBAM_010300

See Amino acid alignment / Visit BSNT_01716 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:24
# Commandline: needle
#    -asequence dna-align/BSNT_01716___ecsC.1.9828.seq
#    -bsequence dna-align/RBAM_010300___ecsC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01716___ecsC-RBAM_010300___ecsC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01716___ecsC-RBAM_010300___ecsC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01716___ecsC
# 2: RBAM_010300___ecsC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 737
# Identity:     520/737 (70.6%)
# Similarity:   520/737 (70.6%)
# Gaps:          58/737 ( 7.9%)
# Score: 1764.0
# 
#
#=======================================

BSNT_01716___      1 ATGACAGATAATCAGCTGCTGATGCAGGAAGCTTTGGAATGGAAAATGCA     50
                     |||||.||..||||||.||||||.||||||||..||.||||||||..||.
RBAM_010300__      1 ATGACCGACGATCAGCAGCTGATACAGGAAGCACTGCAATGGAAAGCGCG     50

BSNT_01716___     51 TTTTTTGCGAAAGGATTCCATGTTTGAACGCTTTTCGAAGCGTGTCCAGA    100
                     |||||||||.||.|||||.|||.|||||||.|||||.||..|..|.|||.
RBAM_010300__     51 TTTTTTGCGCAAAGATTCTATGCTTGAACGTTTTTCTAAAGGAATGCAGG    100

BSNT_01716___    101 CGAAGGTGAATGAACGGATTCCTGAAAAAATCCATACGGTCGTCACCGAG    150
                     ||||..|.|||||.||||||||.||.|||||.|||.|.|||.||||.||.
RBAM_010300__    101 CGAAAATAAATGAGCGGATTCCCGATAAAATTCATGCCGTCATCACAGAA    150

BSNT_01716___    151 AGTGTGAGAAAAATGGTAGAAGCGACAATGGCCGGCTCCAATATCATCAC    200
                     ||..|.|.|||||||...|||||.||||||||.||.||.|||       |
RBAM_010300__    151 AGCATTAAAAAAATGACCGAAGCAACAATGGCGGGTTCAAAT-------C    193

BSNT_01716___    201 TTATAAAA-------AGGATACAAGTGCAC----TGTCGCTCAGTGAAAA    239
                     |..|.|||       .||||||||    ||    ||.||||...||||||
RBAM_010300__    194 TGGTGAAAGGCAAGCGGGATACAA----ACGGTATGACGCTTGCTGAAAA    239

BSNT_01716___    240 AAATGAATTGGCGAAAAAAACGATTGTTTCTTATCAGAAAGTGGCAGCTG    289
                     |.|||...|.||.|.|.||||.||.||.||.||.||.||.||.||.||.|
RBAM_010300__    240 AGATGCCCTCGCCAGACAAACCATCGTATCGTACCAAAAGGTCGCGGCAG    289

BSNT_01716___    290 CTGAGGGAGTCGGCACCGGAGCGGGCGGCATTTTTTTAGGCATTGCTGAT    339
                     |.||.||..||||.||.||.||.|||||.|||||||||||.||.||||||
RBAM_010300__    290 CCGAAGGTATCGGTACGGGGGCCGGCGGAATTTTTTTAGGGATGGCTGAT    339

BSNT_01716___    340 TTTCCGCTGCTGCTTTCAATTAAGATGAAGTGTTTATT-TACCTTGTCTT    388
                     |||||..|||||.|.||.|||||.|||||.|||.|.|| .|.|||||| |
RBAM_010300__    340 TTTCCTTTGCTGTTATCCATTAAAATGAAATGTCTGTTCGATCTTGTC-T    388

BSNT_01716___    389 CCATTTACGGCTTTGATGTGAAAGATGCACAAGAAAG---GA-TGTTTTT    434
                     |.||||||||||.|||||||||||    |||.|.|.|   || |||||||
RBAM_010300__    389 CTATTTACGGCTATGATGTGAAAG----ACAGGGATGAGCGATTGTTTTT    434

BSNT_01716___    435 GCTGCTCGTGTTTCAGCTTGCGTTTTCGAGTGACGATG----GCCGTAAA    480
                     ||||.|..|.||||||.|.||.||.||.||   ||.||    ||.|  ||
RBAM_010300__    435 GCTGTTTATTTTTCAGTTGGCTTTCTCAAG---CGGTGAACAGCGG--AA    479

BSNT_01716___    481 TCGC-TTTTTTCTGTCATCGAAAATTGGGAGACGGAGAAAAAGTGCA---    526
                     .||| |.|..||..|.||.|||.|.|||||..|   ||||||  |||   
RBAM_010300__    480 ACGCATATACTCAATGATTGAACAGTGGGATTC---GAAAAA--GCATGA    524

BSNT_01716___    527 --TCGACTGGAGAGTGTTCCAGCAGGAATATCGCGATTATATCGACGTAG    574
                       ||||.||||||||.||.|||||||||||.|||||||||.|.|||||.|
RBAM_010300__    525 TGTCGATTGGAGAGTTTTTCAGCAGGAATACCGCGATTATCTGGACGTGG    574

BSNT_01716___    575 TGAAGCTTTTTCAGCTTTTGCCGGGCGTGGGAGCGGCAGTCGGCGGAATT    624
                     ||||..|.||||||||||||||||.|||.|||||.||.||.||||||...
RBAM_010300__    575 TGAAATTGTTTCAGCTTTTGCCGGTCGTCGGAGCCGCCGTGGGCGGAGCG    624

BSNT_01716___    625 GCCAATTATAAGCTGCTTGCTCAGCTTGGAGAAACGGCAAGACATGTTTT    674
                     |||||||||||.|||||..|.|||||.||.||.||||||||.||.|||||
RBAM_010300__    625 GCCAATTATAAACTGCTGTCACAGCTCGGTGAGACGGCAAGGCACGTTTT    674

BSNT_01716___    675 TCATCTGAGGATATTAAAGGAAAAAGCCGGAGAATAA    711
                     ||||.|.||  .||.|.||    .||||||....|||
RBAM_010300__    675 TCATTTAAG--AATCACAG----CAGCCGGTACGTAA    705


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