Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01703 and RBAM_010220

See Amino acid alignment / Visit BSNT_01703 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:23
# Commandline: needle
#    -asequence dna-align/BSNT_01703___yhaI.1.9828.seq
#    -bsequence dna-align/RBAM_010220___yhaI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01703___yhaI-RBAM_010220___yhaI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01703___yhaI-RBAM_010220___yhaI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01703___yhaI
# 2: RBAM_010220___yhaI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 342
# Identity:     276/342 (80.7%)
# Similarity:   276/342 (80.7%)
# Gaps:           9/342 ( 2.6%)
# Score: 1152.0
# 
#
#=======================================

BSNT_01703___      1 ---------ATGGATCATCGCATTGAGCGATTAGAATATTACATACAATT     41
                              ||||||||.||.||.|.|||.||||||||||||||||||||
RBAM_010220__      1 ATGGATTCAATGGATCAGCGTATCGGGCGTTTAGAATATTACATACAATT     50

BSNT_01703___     42 ATTAGTGAAAACAGTAGATATGGACAGGTACCCCTTCTATGGGCTTCTCA     91
                     ..|.||||||||.||.||||||||.|.||||||.||.||||.|.|..|.|
RBAM_010220__     51 GCTGGTGAAAACGGTGGATATGGATAAGTACCCTTTTTATGCGATGATGA    100

BSNT_01703___     92 TTGATAAAGGGCTGAGCAAGGAAGAAGGGGAAGCGGTTATGAGGATATGC    141
                     ||||.||||||||||.|.|.||||||||.||||.|||...|.||||.|||
RBAM_010220__    101 TTGAAAAAGGGCTGACCGAAGAAGAAGGAGAAGAGGTCGGGCGGATCTGC    150

BSNT_01703___    142 GACGAATTGTCGGAAGAGCTGGCAACACAAAAAGCGCAAGGATTTGTAAC    191
                     ..|||||||..|||.|||||||...|.||||||||||||||.|||||.||
RBAM_010220__    151 CGCGAATTGGAGGACGAGCTGGAGTCGCAAAAAGCGCAAGGCTTTGTGAC    200

BSNT_01703___    192 CTTTGATAAGCTCCTTGCGCTTTTTGCCGGACAGCTGAATGAAAAATTAG    241
                     .|||||.||||||||||||||||||||.|||||||||||.||||||||||
RBAM_010220__    201 GTTTGACAAGCTCCTTGCGCTTTTTGCGGGACAGCTGAACGAAAAATTAG    250

BSNT_01703___    242 ATGTTCATGAAACGATTTTTGCCCTGTATGAGCAGGGACTTTATCAAGAG    291
                     ||||||||||||||||||||||.||.|||||||||||.||||||..||.|
RBAM_010220__    251 ATGTTCATGAAACGATTTTTGCTCTTTATGAGCAGGGGCTTTATACAGCG    300

BSNT_01703___    292 CTGATGGAAGTCTTTATCGACATCATGAAGCATTTTGATTAA    333
                     ||||||||||..|||||.||.||.||||||||.|||||||||
RBAM_010220__    301 CTGATGGAAGAATTTATTGAGATTATGAAGCACTTTGATTAA    342


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