Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01693 and RBAM_010160
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:23
# Commandline: needle
# -asequence dna-align/BSNT_01693___yhaN.1.9828.seq
# -bsequence dna-align/RBAM_010160___yhaN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01693___yhaN-RBAM_010160___yhaN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01693___yhaN-RBAM_010160___yhaN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01693___yhaN
# 2: RBAM_010160___yhaN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3160
# Identity: 1981/3160 (62.7%)
# Similarity: 1981/3160 (62.7%)
# Gaps: 554/3160 (17.5%)
# Score: 5684.0
#
#
#=======================================
BSNT_01693___ 1 TTGCGAATTATATCTTTACATATCTACCAATACGGAAAATTTTCCAATCG 50
.||..|||.|...|..|.|||||.|||||||||||||||||||||.|.||
RBAM_010160__ 1 ATGAAAATAACGGCGATGCATATTTACCAATACGGAAAATTTTCCGACCG 50
BSNT_01693___ 51 GACCTTTCACTTTTCCGCCTCTCCTGTCCAAGTCATCTACGGATTAAATG 100
.|..|||||..|.||.|..|||||.||.|||||.||||||||.|||||||
RBAM_010160__ 51 AAGTTTTCAGCTGTCAGATTCTCCCGTGCAAGTGATCTACGGGTTAAATG 100
BSNT_01693___ 101 AGGCAGGAAAAACGACGATGATGTCATTCATTGAAAGCATGCTGTTCGGT 150
|.||.||.||||||||..|||||||.||.||..|||||.|||||||||||
RBAM_010160__ 101 AAGCGGGCAAAACGACATTGATGTCCTTTATCAAAAGCGTGCTGTTCGGT 150
BSNT_01693___ 151 TTTCCGAAAACGAAAAAATATGAACCGAAAACAGGCGGTGTCTACGGCGG 200
|||||||||.|.||||||||.||||||||||..|||||.||.||||||||
RBAM_010160__ 151 TTTCCGAAATCAAAAAAATACGAACCGAAAAACGGCGGGGTTTACGGCGG 200
BSNT_01693___ 201 TGTTCTTGAAGCTGAACATCCTGAGTATGG-------GGTGCTG--AAGA 241
.|.|.|.||| .||| ||.|||| ||.|||| ||.|
RBAM_010160__ 201 CGCTGTGGAA-TTGA--------AGCATGGCGATCACGGCGCTGTCAAAA 241
BSNT_01693___ 242 TCGAACGGACGAAAGGGACTGCCGAAAAACTAAGCGTGTACACAG----A 287
||||||||||.|||||..|||||||||||.|.||.|||||.||.| |
RBAM_010160__ 242 TCGAACGGACAAAAGGCGCTGCCGAAAAAGTCAGAGTGTATACGGCTTCA 291
BSNT_01693___ 288 AAAGGGCGAAGTAAAGCAGGGAG-ATGTTTTAAAGCAGCTGTTCCAGGGC 336
||||||.|.|||.|.|||| |||..|.||| |||||..||...|..
RBAM_010160__ 292 ----GGCGAAATCAAGGACGGAGAATGGCTCAAA-CAGCTTCTCTCCGAT 336
BSNT_01693___ 337 ACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCT 386
||||||.||.||.|||||.||||.||.|||||||||||.||||||||.||
RBAM_010160__ 337 ACAGACCGGGCGCTGTACGAAGCGATCTATTCGTTCGATGTATTCGGACT 386
BSNT_01693___ 387 GCAGGAAATTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCT 436
||||||.|||||.||.|||||.||||||||.||.||.||.|||.|.||.|
RBAM_010160__ 387 GCAGGAGATTCAAGCTTTTAACCGGGACAAAATCGGCGAGTTTCTCCTGT 436
BSNT_01693___ 437 TTTCCAGCTTGTTTGGTGCTGAAGCCGTATCGAAGCTTGATTCAAGG--- 483
.|||.|||||.||.||..|.|||||.|...|.||||||| |.||
RBAM_010160__ 437 ATTCGAGCTTATTCGGATCGGAAGCGGCGGCAAAGCTTG----ACGGGCG 482
BSNT_01693___ 484 -CTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTC 532
|||.|.||.|||...||.|||.|.|||||.||.||.|||||.|||||.|
RBAM_010160__ 483 ACTGGCAAAAGAACTTGACAGGATGTATAAGCCGAACGGGCGGAACCCCC 532
BSNT_01693___ 533 AATTGAACCAGGAGCTGGAAACGCTTAAGCAGCTGGCAGTG--AAGCTAA 580
..||.||.||||||.||||.||..|.||||.||| |||.| .||||.|
RBAM_010160__ 533 GCTTAAATCAGGAGTTGGATACATTAAAGCGGCT--CAGCGCCCAGCTGA 580
BSNT_01693___ 581 AACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAG-CTTCTCG--GGGAA 627
|||||||.|||||.|.||||||||||||||| ||| |||||.| |.|||
RBAM_010160__ 581 AACAGGCGGAAGCTGCGGAAGCGGGCTATCA-CAGCCTTCTGGAAGAGAA 629
BSNT_01693___ 628 AAACGAATGCTTGAAGC-----CCGCC--TTGCAGCCGCGGAAACCGA-- 668
||| |||| |.||| ||||| |||..||||
RBAM_010160__ 630 AAA----------AAGCGCCGGCGGCCGTTTGCA-----GGATGCCGAAG 664
BSNT_01693___ 669 ----ATTGAAAGAGACGGCGGGACATATCCGAATGA-----------TTG 703
||||||| ||||||.|.||| || |..
RBAM_010160__ 665 CACGATTGAAA----------GACATAACTGAA-GAAATCAAAACAGTAA 703
BSNT_01693___ 704 AGGGAGCGATTG-AGCGAAAACCATTGCT--------AAATGAAAAAGC- 743
|...||||||.| ||| |||.|| ||| ||| |||.|||
RBAM_010160__ 704 AATCAGCGATAGAAGC-AAAGCC---GCTCGCAGACAAAA--AAACAGCC 747
BSNT_01693___ 744 ---GACACTCGAACAGGTGATTGCAGAATT----TCCGGAA-CA-TGCAG 784
|| |..||||| ||.| || ||||||| || ||.||
RBAM_010160__ 748 TTGGA-AAGCGAAC------TTTC----TTCTTATCCGGAAGCATTGAAG 786
BSNT_01693___ 785 GACAATTTCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCAT 834
|||||.||....||||||.||||||||||.||||||||.|||||.|||
RBAM_010160__ 787 --CAATTCCCGAAGGACGGAATGCATCAGCTTGAAAAATACGAATCGCAT 834
BSNT_01693___ 835 CTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGGTGAAGAT-GGCGG 883
||.||.||||||.|.||.|..|||||||.|||||||| .||.|| |||.|
RBAM_010160__ 835 CTCCATCCGAAAGCGGCCCGTCTTGAGGGGCTTCGGG-CAAAATCGGCTG 883
BSNT_01693___ 884 AGTTGGACAAACAGAGGC-AAAAGCTTATC--CCCGAT---AA--AGAAC 925
|||..|||| ..|.|||.||| |.||.| || ||.||
RBAM_010160__ 884 ---------AACTCAGGCGGCAGGCTGATCTGCTCGCTCCAAATGAGGAC 924
BSNT_01693___ 926 TATTGGCG---AAAGAAACGCTGATACAAGAGCTTT-CGGC-AGC-GTTT 969
|||..| |||||...||.|.|.||.||||||| |||| ||| |
RBAM_010160__ 925 --TTGCTGCAAAAAGAGCGGCAGCTGCAGGAGCTTTCCGGCGAGCAG--- 969
BSNT_01693___ 970 CATATGTACCAATCCTGTGGAGAACAGCTGGCAGCCATTCAGGCACAGCT 1019
|||||||||.||||..|.||.||||||||.||.|||||.||..|||||.|
RBAM_010160__ 970 CATATGTACGAATCGCGCGGCGAACAGCTTGCCGCCATCCAATCACAGAT 1019
BSNT_01693___ 1020 GCGCCAGGCGTCTGCGCAGACAG-----CGGCAGGGCTGGAACAGCTCAA 1064
.||.|||.|.||||| |.| ||.||||..||.|.|||||
RBAM_010160__ 1020 CCGGCAGACATCTGC-----CCGCGTTTCGTCAGGATTGCAGCAGCT--- 1061
BSNT_01693___ 1065 TAAAACGGATGAAAATGAGCTCCTGAATA--------------TGAACAC 1100
||||.| |.||||| ||..| |||||||
RBAM_010160__ 1062 -----CGGAAG-ACATGAG-----GAGGACGGCATTCTTTCACTGAACAC 1100
BSNT_01693___ 1101 CTCATATGATTATGAATGGCAGCTTCAGCAAGCGGTGCAG-----CAATA 1145
|...|||||.||||||||||.|||.|||.||||.|||||| |
RBAM_010160__ 1101 CGATTATGAATATGAATGGCGGCTGCAGGAAGCCGTGCAGAGCGCC---- 1146
BSNT_01693___ 1146 TGTACAGGCAAGAGACAGAAA-ACGGCAGCTTGACGAGACATTTGAACTT 1194
|.||||||||||||.||||| || .||||||||.|.||..||.||||..
RBAM_010160__ 1147 -GGACAGGCAAGAGAAAGAAAGAC-ACAGCTTGATGCGATTTTCGAACAA 1194
BSNT_01693___ 1195 GCCCGGCAAGAGCTGGAAGA-----CACGGAAAAGGCCGTTCGTGCCGCT 1239
||.||||..||||||||||| .|||.||| |.||||
RBAM_010160__ 1195 GCGCGGCTGGAGCTGGAAGAAGCCGAACGAAAA--------CATGCC--- 1233
BSNT_01693___ 1240 TCGTCCGCG------ATTCTTGAA----GATAGCCAAAGAAAAGATAAAG 1279
|.|.|.||| ||| |||.| |.|..| ||.|||||.||||
RBAM_010160__ 1234 TTGACGGCGGAAAACATT-TTGGACCCCGCTGTC---AGGAAAGAAAAAG 1279
BSNT_01693___ 1280 AAGCTGCTCTTA-GAGCATATGATGAAACACAGGGGCAGCACCAAGAGCA 1328
||||.||| ||| .|.|||||.|..|||| |||.|...||..||.|
RBAM_010160__ 1280 AAGCCGCT-TTACAATCATATAAGCAAAC-----GGCTGATACAGAAGGA 1323
BSNT_01693___ 1329 AGCGAAGCTCAGAGAACAGCTAACGTT-----TTTTGAAAGACAGCAGGC 1373
|.||||...||| ||..|.||| |.|.||||.|||||..||
RBAM_010160__ 1324 AACGAATGGCAG------GCACATGTTCAGCATCTGGAAAAACAGCGCGC 1367
BSNT_01693___ 1374 TAAACAGAAAAAG-ACTGTCATTGCAGTTGGTATGTTGTTCATCGTTCTC 1422
.|||||.|||||| .||.|| |.|..|..||.||..||||||| |.|..
RBAM_010160__ 1368 CAAACAAAAAAAGCTCTTTC-TCGGTGCGGGCATTCTGTTCAT--TGCGA 1414
BSNT_01693___ 1423 TTTT--CTCTGCTGCAGCAATGGATTCCCGCCATAAG-----TTT--CGG 1463
|||| ||.||.|..||.|||||.|.|||||| | ||| |||
RBAM_010160__ 1415 TTTTCGCTATGTTAAAGGAATGGCTGCCCGCC----GCCCTTTTTAGCGG 1460
BSNT_01693___ 1464 TGCTGCACTTATTGTGTATTGGCTTGTATCAGG------AAAATCGTCTT 1507
|||| ||..|..|||||..|| |.||.|| ||||.|| ||.
RBAM_010160__ 1461 TGCT---CTGCTGCTGTATATGC---TGTCCGGCATGCAAAAACCG-CTG 1503
BSNT_01693___ 1508 C--TC-GAAACAG------CCGAGAGACAAGACAGCCCATGA---CGGAT 1545
| || ||||.|| ||| ||.||||||.| |.|| |||..
RBAM_010160__ 1504 CCGTCAGAAAGAGGAGGGCCCG-GACACAAGAAA----AAGAAGCCGGCG 1548
BSNT_01693___ 1546 ATTTCTCCAGCAGAAGCTGAAATGCT-TAGAGAAGCGTTATGGGAGGATG 1594
||.|||..||.||..|||||..|.|| .|| ||||.|.|.|||...||.|
RBAM_010160__ 1549 ATCTCTAAAGAAGCGGCTGATCTTCTGCAG-GAAGAGCTTTGGCGTGACG 1597
BSNT_01693___ 1595 ACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAG 1644
.|||..|...||||||.||..|..|..|.|..||.|.|||..|.||.||.
RBAM_010160__ 1598 GCCGGCACCGGCAGCAGCTGATTGCGGATCAAGCCGTGCTTGAACAGAAA 1647
BSNT_01693___ 1645 GAGGCGGCGTATGAAAGGGTCATCCAGCAGTTTGAACAGTGGGAAGCCGA 1694
||.|||||.||||||||.|||||||..||.|.||||.|.|||||.||.||
RBAM_010160__ 1648 GAAGCGGCATATGAAAGAGTCATCCGCCAATATGAAGAATGGGAGGCGGA 1697
BSNT_01693___ 1695 AATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCT-CGGA 1743
||||||||||||....|.|||||..||.|.||||||||||||.|| .||.
RBAM_010160__ 1698 AATGGCGCCGTCTGAAAAACAGGCGGAACTTTTTATGAATGAACTGGGGT 1747
BSNT_01693___ 1744 TTTAAGGAAGATCCAT--CATTTTTGCTTGATGCATA-CAGCT-TAATGA 1789
|||.|||||| |||.| |||.|| |||||.||||| || | |.||||
RBAM_010160__ 1748 TTTCAGGAAG-TCCTTCCCATCTT--CTTGACGCATATCA--TGTGATGA 1792
BSNT_01693___ 1790 AGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCATTGAAGCA 1839
|.|||||.|||||||||.|....||.|||||||||||||||||||||||.
RBAM_010160__ 1793 AAGATGTCAAAAAAGAAATCCTTAACAAGCATGAGCTGACCATTGAAGCG 1842
BSNT_01693___ 1840 GGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCT 1889
|||||||||.||||||..|..|||.||||.||.||.||.||||..|.|||
RBAM_010160__ 1843 GGCAGGCTGCAAAAGCTGCAAAGAGCATTTGAGGACCGGGTCAAAAAGCT 1892
BSNT_01693___ 1890 TCTTCCCGTGAATCAGAGTCAGGATATCTCCATTTCGGACGCCCTTCACA 1939
|||| ||||||.|
RBAM_010160__ 1893 ---------------GAGT-----------------------CCTTCAGA 1904
BSNT_01693___ 1940 CATTGCGGAA--AAACATTGAACGTGAAAAAGAAA-----------TTG- 1975
||||| .|.| ||..||| |||||||| |||
RBAM_010160__ 1905 -----CGGAAGGGAGC--TGTCCGT--AAAAGAAAGACTGCACGTTTTGC 1945
BSNT_01693___ 1976 -------------------------AGAAGCAAA---AAA--AGGAAATT 1995
.|||||||| ||| |||...|.
RBAM_010160__ 1946 TGGCGCAGGCGGAACGGGCCCGTGAGGAAGCAAAACGAAAGCAGGCGCTC 1995
BSNT_01693___ 1996 GAAACAGATATTCATTATACAAAGGAACAGATGCTTGAACTTGAGC-AAG 2044
|||||.|||.|.|...||.||.|.||.||.||||.|||| ||.|.| |||
RBAM_010160__ 1996 GAAACGGATCTGCTGCATGCACAAGAGCAAATGCGTGAA-TTAAACGAAG 2044
BSNT_01693___ 2045 AAATACAGTATTTCCACGCA---CAGATTGAACAGTTATT--TGCCGCGG 2089
||.|.| |||.|.|||.| |||.|..|||||.|.|| || ||||
RBAM_010160__ 2045 AAGTTC---ATTACTACGAACAGCAGGTCAAACAGCTTTTCATG--GCGG 2089
BSNT_01693___ 2090 CTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGG 2139
|.|..||||||.||.|.||....||||.| ||..||..||||
RBAM_010160__ 2090 CAGGCGCAAAAAACCGCGAACACTTTTGT---------GAACTCGCCAGG 2130
BSNT_01693___ 2140 C-AATTGAA--------GGATACGGAGAACAAGCTTC-----ATCACGTA 2175
| .|.|||| |||.||.|||....||||.| |||| |
RBAM_010160__ 2131 CTGACTGAAAGCCGCCGGGAAACAGAGCGGCAGCTGCGCGAAATCA---A 2177
BSNT_01693___ 2176 AACGCACAGCTT------CA-AGGCGGGTACCCGGAGGA-----ACTTGA 2213
|||||| ||| || ||||||..|.|.|..||| ||.|||
RBAM_010160__ 2178 AACGCA---CTTGTCCGGCATAGGCGGAAAACAGCTGGAGCCGTACATGA 2224
BSNT_01693___ 2214 ACTGGCGGATTCCAATACGC----TTTCTGAA-TTGAAAGATA-AGCAAT 2257
.| ||| |.||.||| ||| ||.||| ||
RBAM_010160__ 2225 GC---------------CGCACAGTGTCCGAACTTG-AACATACAG---- 2254
BSNT_01693___ 2258 TTGTTGAGAATGAA----AGAAAAGAGCGGCTGACTGAGGAGATCGAGCG 2303
|.|||.||||.||| ||||||.|.| ||| |||||| |...||||
RBAM_010160__ 2255 TCGTTCAGAAGGAAACAGAGAAAAAAAC-GCT---TGAGGA-AAAAAGCG 2299
BSNT_01693___ 2304 ----GCTCCG-CAGCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATT 2348
|||||| .|| ||||.|||..|..|..|.||.||.||.||.||..|
RBAM_010160__ 2300 CCCAGCTCCGTGAG-CAAACCGCTTTATTAACGGTGAAGCAAGAGCAGCT 2348
BSNT_01693___ 2349 AGAGGCTTCGGGATTGGTCTCAGACCTCAAGCTTCAAACCGAAATGCAAA 2398
.|||.|.|||||..|.||.||.||..|.||.|..||.||.||||||||.|
RBAM_010160__ 2349 GGAGTCCTCGGGGCTTGTATCCGATTTAAAACAGCAGACAGAAATGCAGA 2398
BSNT_01693___ 2399 AAGATCGTGTAAAAGAAACGGCTAAAAAATGGGCCTCGATACAAATGGTC 2448
|.||.||.||.|||.||||.||||||.|.||||||.|..||||.|.||||
RBAM_010160__ 2399 AGGAGCGCGTGAAAAAAACCGCTAAAGAGTGGGCCGCATTACAGACGGTC 2448
BSNT_01693___ 2449 AAACAGGTGATCAGAAACAAATTGGAGCGGCATAAAAAAATCGA-GCTTC 2497
|.|||..|.|||||..|.|||.|||||||||||||||||.| || |||||
RBAM_010160__ 2449 AGACACATTATCAGGGAAAAAATGGAGCGGCATAAAAAAGT-GACGCTTC 2497
BSNT_01693___ 2498 CGCGCCTTCTAGAGACGGCAGGAGAATTCTTCCGCCCTCTGACTGACGGA 2547
|.||.||..||||.||.||.||.|.|||.|.|...||.||.||.||||||
RBAM_010160__ 2498 CCCGTCTGTTAGAAACCGCCGGTGCATTATACGTACCGCTTACGGACGGA 2547
BSNT_01693___ 2548 AACTACCA-AACCATT-TATTTTTCCGAAACGGATGATTCGATCATGGTT 2595
..|||.|| || ||| |||||||||||..|.||||||||.||.|||||.
RBAM_010160__ 2548 CGCTATCACAA--ATTGTATTTTTCCGAGGCTGATGATTCCATTATGGTC 2595
BSNT_01693___ 2596 ATGC----ATCGCGATGGAACTGTCTATCATGCGGAAGAGCTGTCACAAG 2641
|||| | ||.|||||.||.|.|..|||.|..||.||||||||.|
RBAM_010160__ 2596 ATGCGGAAA----GACGGAACGGTGTTTTCTGCAGGCGAACTGTCACAGG 2641
BSNT_01693___ 2642 GGACGTGTGAACAGCTGTATACAGCGATCCGATTTGCTTTGGCCGTTACG 2691
.|.|.||.||.|||||.|||.|.|||||.|| |||.|||.|| |
RBAM_010160__ 2642 CGGCATGCGAGCAGCTTTATGCGGCGATTCG------TTTTGCCCTT--G 2683
BSNT_01693___ 2692 CGCCAGGGTGGG-----------TCAAAGCTTCCGTTCCAGCTTGACGAC 2730
||.|||.|.||| ||| ||.|||||....|||||.|||
RBAM_010160__ 2684 CGTCAGAGAGGGAATCTGCGGTATCA---CTGCCGTTTTTACTTGATGAC 2730
BSNT_01693___ 2731 AGTTTTGTTCATTTTGATCAGG-AAAGGCTGAAACGTGTATTACATGTTC 2779
||||||||.|||||||| |||| |..|||||.|.||..|.||..||||.|
RBAM_010160__ 2731 AGTTTTGTCCATTTTGA-CAGGCAGCGGCTGCAGCGGCTGTTTGATGTGC 2779
BSNT_01693___ 2780 TGTATAATTTATCTGAAGGCGGTAGGCAGATTTTGTATTTTACATGCCAT 2829
||.||.|..|.||.||||||||..|||||||..|.|||||.||.||||||
RBAM_010160__ 2780 TGAATCAGCTTTCAGAAGGCGGGCGGCAGATACTTTATTTCACCTGCCAT 2829
BSNT_01693___ 2830 GAGCACGTAAAAGATG--CATTTCATAGCAGCCAAATCATCCATTTGG-- 2875
|||||.|| .||..| |.|||||.|||.|.|||.||||.| ||
RBAM_010160__ 2830 GAGCATGT--CAGCCGGTCTTTTCACAGCGGACAAGTCATGC----GGCT 2873
BSNT_01693___ 2876 --TGTCATAA 2883
||||||||
RBAM_010160__ 2874 CCTGTCATAA 2883
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