Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01674 and RBAM_010000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_01674___yheD.1.9828.seq
# -bsequence dna-align/RBAM_010000___yheD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01674___yheD-RBAM_010000___yheD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01674___yheD-RBAM_010000___yheD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01674___yheD
# 2: RBAM_010000___yheD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1439
# Identity: 953/1439 (66.2%)
# Similarity: 953/1439 (66.2%)
# Gaps: 157/1439 (10.9%)
# Score: 2943.0
#
#
#=======================================
BSNT_01674___ 1 GTGAATCCTAAACGG-TTTTTGATCGGCATAGACAAAACCAGTGAAAACA 49
|||||||.||||.|| |..||| |||||||.||.||||..||..||||.|
RBAM_010000__ 1 GTGAATCATAAAGGGATGATTG-TCGGCATCGATAAAAAAAGCAAAAATA 49
BSNT_01674___ 50 CCCTGTTTCTGCCCTCTTCGCTGAAGCGAGACGGACTTTTGCAT--GCCG 97
|.||||||||.|||||.||..||||.||.||.||.||||| || ||.|
RBAM_010000__ 50 CGCTGTTTCTCCCCTCCTCCATGAAACGGGAAGGGCTTTT--ATCCGCTG 97
BSNT_01674___ 98 CATTCGGAACGAAGGTTGTCAGATGCCACGTTGC--TTACAGACGGCAT- 144
|.|||||.||.||||||||||.|||||..||.|| ||.|..| ||
RBAM_010000__ 98 CCTTCGGGACCAAGGTTGTCAAATGCCGTGTAGCCTTTTCTCA----ATC 143
BSNT_01674___ 145 -CTGGAACAAACCGTGCTACTCTCTGAAAATCTGTTTCATGAGCTTTTGC 193
||.|||.|||.||.|||.||.||||||.||.|||||.|.|||||.|||.
RBAM_010000__ 144 ACTTGAAAAAAGCGCGCTCCTTTCTGAAGATTTGTTTGAGGAGCTGTTGA 193
BSNT_01674___ 194 TCCCCCACCGAAGCAGGGCTGATATACTGATTCATGATCATACAGTGCAT 243
|.||.||...||||.|||||||..|.||.||.||.|..||.||.|||||.
RBAM_010000__ 194 TACCGCATAAAAGCCGGGCTGACTTTCTCATACACGGCCAGACGGTGCAC 243
BSNT_01674___ 244 ATCGGGCCGTTAGTCGGCATCTTTACGGCAGGGTTTACTGTATCTCTTGA 293
|||||.|||.|..|||||.|.||.||.||.|||||.||...|||.|
RBAM_010000__ 244 ATCGGACCGCTGATCGGCGTTTTCACAGCCGGGTTCACATCATCGC---- 289
BSNT_01674___ 294 ACGT----CCATTTAAG-GATCGTTCCCTCTTTTTTTCTAAACTTGTCAC 338
||| ||..||||| ||.|||.|...|||.|||||.||..|..||.|
RBAM_010000__ 290 -CGTCCCGCCCGTTAAGAGACCGTACAGCCTTCTTTTCCAAGATGCTCTC 338
BSNT_01674___ 339 GTTACACGAGCAAGC---CGGAGGCTACTGCTTCGTTTTTGGCGCGCACC 385
..|.||.||.||.|| |||| ||.||.||||||||.||.||.||.|
RBAM_010000__ 339 TCTTCATGAACAGGCGAACGGA---TATTGTTTCGTTTTCGGGGCCCATC 385
BSNT_01674___ 386 AAATCAATTGGGAGGAAGGCACGATTGAAGGCCTCCTTTACAGGGAAAAC 435
|.|||||.|||||.||||||||..|..|||..||..||||.|..||||||
RBAM_010000__ 386 AGATCAACTGGGAAGAAGGCACCGTCCAAGCGCTGATTTATAAAGAAAAC 435
BSNT_01674___ 436 GGCTGGGAGAAAAAAA-------TCGTTCCATTGCCGAACGTCGTTTATG 478
.||||| ||| .|||.||..|.|||||.|||||.||||
RBAM_010000__ 436 AGCTGG-------AAACGGACGGCCGTCCCGCTTCCGAATGTCGTATATG 478
BSNT_01674___ 479 ACCGTTTGCCGAACCGAAAAATTGAAGATTCACTT---CTCTTGCAACAT 525
||.|..|.||||.||||||||..||||| |.|| ||.||.||.||.
RBAM_010000__ 479 ACAGGCTCCCGAGCCGAAAAACGGAAGA---AGTTCCGCTTTTACAGCAG 525
BSNT_01674___ 526 ACAAAAAAGAGGCTGATCGATGAATATCAGATCCCATGGTTTAAT----A 571
||||||.|.||||||||..||||.||||||||.|||||||||||| |
RBAM_010000__ 526 ACAAAACAAAGGCTGATGAATGACTATCAGATTCCATGGTTTAATCCGCA 575
BSNT_01674___ 572 AAACGTTTTTCAATAAATGGAACGTTCATCAATTGCTCGAAAAAGATCCG 621
| ||.||.|||||||||.||.|||||.|..|.||.||||||
RBAM_010000__ 576 A----TTCTTTAATAAATGGGACATTCATAAGCTTCTGGAAAAA------ 615
BSNT_01674___ 622 AGAACGG---CACC-CT----TTTTGCCTAGATCCGAGCTGACA-CCGTC 662
|||.| |||| || ||.||||.|.|||.|..||| || |||..
RBAM_010000__ 616 --AACAGTCTCACCGCTTCACTTCTGCCAAAATCTGTCCTG-CACCCGAA 662
BSNT_01674___ 663 TG-TGGAGCTGATTGATGAGCTCTGTGGCGCATACAAAAAAGTCTATATC 711
|| .|.||| |.|.||...|.|.||..||.|.|...|.|..|||||||||
RBAM_010000__ 663 TGCAGAAGC-GTTAGAAACGTTATGCAGCACGTTTGACACCGTCTATATC 711
BSNT_01674___ 712 AAACCGGCTAATGGAGCACTCGGCACCGGCATTTATCAGCTGAAAAGAAC 761
|||||.||..|.||.||||||||.||.||.|||||..||.||.|||.|||
RBAM_010000__ 712 AAACCTGCAGACGGCGCACTCGGAACGGGGATTTACAAGGTGGAAAAAAC 761
BSNT_01674___ 762 AGATGGCGGCCTGACGGTAAAGCATACGAATGACGCCAAAAC-------A 804
|||||.||||.|..|.||.||.||.||||||||.|..||||| |
RBAM_010000__ 762 AGATGCCGGCTTATCTGTCAAACACACGAATGAGGAAAAAACGGTGGTGA 811
BSNT_01674___ 805 TTTACTTCGATTGATTATTCCGATGCCGCCTCATTCCTTGCAGAATTTCA 854
||...||.|||||.|||||.||.||.|||.|..||..||||.|
RBAM_010000__ 812 -------CGGCAGAGTATTCAGATGCGGCATCCTTCATGACATCATTTAA 854
BSNT_01674___ 855 --AAAACAGCAGAACCCGTCCGACTTTCTCATTCAGCAAGGTGTTGATCT 902
|||||| |..|||||||||..|||.|.|||||||||||..||||.||
RBAM_010000__ 855 AGAAAACA--ATGACCCGTCCGCATTTTTAATTCAGCAAGGCATTGACCT 902
BSNT_01674___ 903 CATC-----GAATTTCAAGGCAAACCAGCG-------GATTTCCGTGTCC 940
.||| |.|| || ||| ||||||.|.||.|
RBAM_010000__ 903 GATCCGGCTGGAT-----GG-------GCGCCCCGTCGATTTCAGGGTGC 940
BSNT_01674___ 941 ATACCAATAAAAAC----AGAAAAGGAAAATGGACAGTGACAGCAATCGC 986
|.||.||||||||| || ||.||||||||||||||.||.||.||
RBAM_010000__ 941 ACACGAATAAAAACGCCGAG----GGGAAATGGACAGTGACGGCCATTGC 986
BSNT_01674___ 987 CGTAAAAATTTCCGGAAAGAACAGCATTACAACACATCTTTCTAACGGCG 1036
.|.||||||||||||..|.||||||||.||.||.|||||..|.|.|||||
RBAM_010000__ 987 GGCAAAAATTTCCGGTGAAAACAGCATCACGACGCATCTGGCAACCGGCG 1036
BSNT_01674___ 1037 GCACTGTAAAGACACTTGCGGAAGTGTACGATGATCC-CGCTGAAAGAGT 1085
|....||.|.|||..|.||.|||.|.||||..||||| ||| ||.|||||
RBAM_010000__ 1037 GAGAAGTCAGGACGTTAGCTGAATTATACGGCGATCCGCGC-GAGAGAGT 1085
BSNT_01674___ 1086 --------TGAGGTCATTAAAAAGCTTTCTGCAGCGGCACTGACGGCAAG 1127
||.|| ||.|||||...|||.||..||.|||..||
RBAM_010000__ 1086 CGGCATGATGCGG--------AAACTTTCAAAAGCCGCCTTGGCGGTCAG 1127
BSNT_01674___ 1128 CCATGTCCTTCATGATCATATCGAGGGGTTTATCGGGGAGATCGGTTTCG 1177
||..||..|..||||.||.||.||.||.||||||||.||.||||||||.|
RBAM_010000__ 1128 CCGCGTGTTAAATGAGCACATTGAAGGTTTTATCGGCGAAATCGGTTTTG 1177
BSNT_01674___ 1178 ATTTTGGCATTGATCAGAACGGTAAAGTATGGATGTTTGAAGCGAATTCG 1227
|..|.|||.|.|||||....||.|||||.||||||||||||||.|||||.
RBAM_010000__ 1178 ACCTCGGCGTCGATCATTCAGGGAAAGTTTGGATGTTTGAAGCCAATTCC 1227
BSNT_01674___ 1228 CGCCCGGGCCGAAGCATTTTTTCTCATCCAAATTTGCATCAT--GTTGAT 1275
|||||.||.||.|||||||||||.|||||.||..||.| || ||.|||
RBAM_010000__ 1228 CGCCCCGGGCGCAGCATTTTTTCCCATCCGAAGCTGAA--ATCGGTCGAT 1275
BSNT_01674___ 1276 TCTCTTACAAAACGAAGAAGCTTTGAATACGCGTCATATTTATCTGAGAA 1325
|..||.||||||||.||||..||||||||||||||.|||||||| ||||
RBAM_010000__ 1276 TACCTGACAAAACGGAGAAATTTTGAATACGCGTCGTATTTATC--AGAA 1323
BSNT_01674___ 1326 --GGCAATCATATCTCCTGAAGCATTGTGGCCTTCGTAA 1362
|.|.||||...|.||.|||..|.|.|||| .||.|
RBAM_010000__ 1324 CGGTCCATCACCGCCCCGGAAAAACTTTGGC---GGTGA 1359
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