Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02773 and RBAM_009920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_02773___ymcC.1.9828.seq
# -bsequence dna-align/RBAM_009920___ymcC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02773___ymcC-RBAM_009920___ymcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02773___ymcC-RBAM_009920___ymcC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02773___ymcC
# 2: RBAM_009920___ymcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 595
# Identity: 372/595 (62.5%)
# Similarity: 372/595 (62.5%)
# Gaps: 80/595 (13.4%)
# Score: 982.0
#
#
#=======================================
BSNT_02773___ 1 TTGAACGGTATCGCATGGATGATTGTTTTCTGTGAAATTGCGTTTTG--- 47
|||||||..||.||.|||.|||||||..|.|||||...|||.|||||
RBAM_009920__ 1 TTGAACGCGATTGCTTGGTTGATTGTCATTTGTGAGGCTGCTTTTTGGGC 50
BSNT_02773___ 48 GGTTGTCA---TTGTATTGG-GGCTTGCTGTACGTTACGTATTCAAACGA 93
||.||||| |.|.||||| |||..|||.|| ||||||..||.
RBAM_009920__ 51 GGCTGTCATCTTCGGATTGGCGGCGCGCTATA-------TATTCAGGCGG 93
BSNT_02773___ 94 CATACATTAGGACTGCTATTCCTTGGCT-TAACTCCAGTTAT-------C 135
||.|...|.|||.|| |.||..||.||| |.|.||| .|||| |
RBAM_009920__ 94 CAAAAGCTCGGAATG-TTTTTTTTCGCTCTCATTCC-TTTATTGGATGCC 141
BSNT_02773___ 136 GATTTGATTTTGTTAGCGGCAACTGGTGTGGACCTT-TACCGCGGAGCCT 184
|...||.||.||...||.|||.|||.| || |||.|.||.||..
RBAM_009920__ 142 GTACTGTTTCTGGCGGCTGCAGCTGAT-------TTATACAGAGGGGCGG 184
BSNT_02773___ 185 CAGCGACCGCAGCCCATGGGATTGCAGCTGTTTACATCGGTATATCGATC 234
|.|||||....||.||||.|.|.||.||..||||.|||||..|.||..||
RBAM_009920__ 185 CGGCGACTATGGCGCATGCGGTGGCGGCCATTTATATCGGAGTGTCTGTC 234
BSNT_02773___ 235 G-CTTATGGAAAA-CAAATGATTCAATGGGCAGATGAAAAGTTCCAATAT 282
| |||..|||||| | ||||||||||||||.|||||...|||||..|||
RBAM_009920__ 235 GCCTTCGGGAAAAGC--ATGATTCAATGGGCGGATGAGCGGTTCCGCTAT 282
BSNT_02773___ 283 TATGTGACAAAAAAAGGCGCAAAACCGCTGAAACGTTTTGGAATGGACCA 332
||||||...||..||||.|||||||||.|.||.||.|..||..||||..|
RBAM_009920__ 283 TATGTGGTCAAGGAAGGGGCAAAACCGGTCAAGCGGTACGGGCTGGATTA 332
BSNT_02773___ 333 TGCCAAGCACGGTGCGAAAGGCTGGCTAAGACATGTGCTGGCCTACTTAA 382
||||||.||...|||.|||||.|||..|||||||||..|.|| |
RBAM_009920__ 333 TGCCAAACATTATGCAAAAGGATGGGGAAGACATGTATTAGC-------A 375
BSNT_02773___ 383 TTGGT-----GCG--GGACTATTGGCAGGGATGATCTATTTTATCAATGA 425
||.|| ||| |..||.||.||.||.|.|.|.|.|.|.||..|.||
RBAM_009920__ 376 TTTGTCATCGGCGGCGTTCTTTTAGCCGGAACGGTATTTCTCATTCAGGA 425
BSNT_02773___ 426 CTCTGCCCGAACCGAGGCGTTGAGC-GGCATTCTTAAACTG-TGGACTGT 473
|.||.||||.|||||.|||.|.||| .|| |.|||||..| |||.||||
RBAM_009920__ 426 CGCTTCCCGCACCGAAGCGCTCAGCAAGC--TGTTAAAGGGCTGGTCTGT 473
BSNT_02773___ 474 C--ATTATAGGCATTGACTTTCTCATTACAGCCAGCTATTTTATTTG--- 518
| |||.| ||||.||.|||.|.||.|..||.|| |||.||||
RBAM_009920__ 474 CGTATTGT--GCATCGATTTTTTGATCATGGCGAG----TTTTTTTGTGA 517
BSNT_02773___ 519 -GCC-AAAAAAAG-AGAAAGCTTCGGCGAATCTCAGGAG--TTAA 558
||| |||||||| ||||| |.|| |.|||| .|||
RBAM_009920__ 518 TGCCGAAAAAAAGAAGAAA----CAGC------CGGGAGCTGTAA 552
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