Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02773 and RBAM_009920

See Amino acid alignment / Visit BSNT_02773 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:43
# Commandline: needle
#    -asequence dna-align/BSNT_02773___ymcC.1.9828.seq
#    -bsequence dna-align/RBAM_009920___ymcC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02773___ymcC-RBAM_009920___ymcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02773___ymcC-RBAM_009920___ymcC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02773___ymcC
# 2: RBAM_009920___ymcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 595
# Identity:     372/595 (62.5%)
# Similarity:   372/595 (62.5%)
# Gaps:          80/595 (13.4%)
# Score: 982.0
# 
#
#=======================================

BSNT_02773___      1 TTGAACGGTATCGCATGGATGATTGTTTTCTGTGAAATTGCGTTTTG---     47
                     |||||||..||.||.|||.|||||||..|.|||||...|||.|||||   
RBAM_009920__      1 TTGAACGCGATTGCTTGGTTGATTGTCATTTGTGAGGCTGCTTTTTGGGC     50

BSNT_02773___     48 GGTTGTCA---TTGTATTGG-GGCTTGCTGTACGTTACGTATTCAAACGA     93
                     ||.|||||   |.|.||||| |||..|||.||       ||||||..||.
RBAM_009920__     51 GGCTGTCATCTTCGGATTGGCGGCGCGCTATA-------TATTCAGGCGG     93

BSNT_02773___     94 CATACATTAGGACTGCTATTCCTTGGCT-TAACTCCAGTTAT-------C    135
                     ||.|...|.|||.|| |.||..||.||| |.|.||| .||||       |
RBAM_009920__     94 CAAAAGCTCGGAATG-TTTTTTTTCGCTCTCATTCC-TTTATTGGATGCC    141

BSNT_02773___    136 GATTTGATTTTGTTAGCGGCAACTGGTGTGGACCTT-TACCGCGGAGCCT    184
                     |...||.||.||...||.|||.|||.|       || |||.|.||.||..
RBAM_009920__    142 GTACTGTTTCTGGCGGCTGCAGCTGAT-------TTATACAGAGGGGCGG    184

BSNT_02773___    185 CAGCGACCGCAGCCCATGGGATTGCAGCTGTTTACATCGGTATATCGATC    234
                     |.|||||....||.||||.|.|.||.||..||||.|||||..|.||..||
RBAM_009920__    185 CGGCGACTATGGCGCATGCGGTGGCGGCCATTTATATCGGAGTGTCTGTC    234

BSNT_02773___    235 G-CTTATGGAAAA-CAAATGATTCAATGGGCAGATGAAAAGTTCCAATAT    282
                     | |||..|||||| |  ||||||||||||||.|||||...|||||..|||
RBAM_009920__    235 GCCTTCGGGAAAAGC--ATGATTCAATGGGCGGATGAGCGGTTCCGCTAT    282

BSNT_02773___    283 TATGTGACAAAAAAAGGCGCAAAACCGCTGAAACGTTTTGGAATGGACCA    332
                     ||||||...||..||||.|||||||||.|.||.||.|..||..||||..|
RBAM_009920__    283 TATGTGGTCAAGGAAGGGGCAAAACCGGTCAAGCGGTACGGGCTGGATTA    332

BSNT_02773___    333 TGCCAAGCACGGTGCGAAAGGCTGGCTAAGACATGTGCTGGCCTACTTAA    382
                     ||||||.||...|||.|||||.|||..|||||||||..|.||       |
RBAM_009920__    333 TGCCAAACATTATGCAAAAGGATGGGGAAGACATGTATTAGC-------A    375

BSNT_02773___    383 TTGGT-----GCG--GGACTATTGGCAGGGATGATCTATTTTATCAATGA    425
                     ||.||     |||  |..||.||.||.||.|.|.|.|.|.|.||..|.||
RBAM_009920__    376 TTTGTCATCGGCGGCGTTCTTTTAGCCGGAACGGTATTTCTCATTCAGGA    425

BSNT_02773___    426 CTCTGCCCGAACCGAGGCGTTGAGC-GGCATTCTTAAACTG-TGGACTGT    473
                     |.||.||||.|||||.|||.|.||| .||  |.|||||..| |||.||||
RBAM_009920__    426 CGCTTCCCGCACCGAAGCGCTCAGCAAGC--TGTTAAAGGGCTGGTCTGT    473

BSNT_02773___    474 C--ATTATAGGCATTGACTTTCTCATTACAGCCAGCTATTTTATTTG---    518
                     |  |||.|  ||||.||.|||.|.||.|..||.||    |||.||||   
RBAM_009920__    474 CGTATTGT--GCATCGATTTTTTGATCATGGCGAG----TTTTTTTGTGA    517

BSNT_02773___    519 -GCC-AAAAAAAG-AGAAAGCTTCGGCGAATCTCAGGAG--TTAA    558
                      ||| |||||||| |||||    |.||      |.||||  .|||
RBAM_009920__    518 TGCCGAAAAAAAGAAGAAA----CAGC------CGGGAGCTGTAA    552


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