Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02774 and RBAM_009910
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:43
# Commandline: needle
# -asequence dna-align/BSNT_02774___pksA.1.9828.seq
# -bsequence dna-align/RBAM_009910___pksA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02774___pksA-RBAM_009910___pksA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02774___pksA-RBAM_009910___pksA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02774___pksA
# 2: RBAM_009910___pksA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 642
# Identity: 421/642 (65.6%)
# Similarity: 421/642 (65.6%)
# Gaps: 84/642 (13.1%)
# Score: 1363.0
#
#
#=======================================
BSNT_02774___ 1 ATGCCAAAACAAATTGACCATGAGAAAAGAAGAAAACAAATTGCAGAAGC 50
|||||.|||..|||.||.|||||.|||||||||||||||||.||.|||||
RBAM_009910__ 1 ATGCCTAAAATAATCGATCATGAAAAAAGAAGAAAACAAATAGCCGAAGC 50
BSNT_02774___ 51 AACGTGGCG--CGTCATTTTAGAACGAGGGATGGAGGGAGCATCAGCCAG 98
.||.||||| || |||||.||.||.||.|||||.|||||..|||..||
RBAM_009910__ 51 CACTTGGCGGACG--ATTTTGGAGCGGGGAATGGAAGGAGCGACAGTGAG 98
BSNT_02774___ 99 GAACATTGCAAAGGAAGCAGGATTGTCATTAGGTGCACTGCGCCATTATT 148
.|||||.||..|||||||.||..|.||.|||||.||.|||.|.||.||||
RBAM_009910__ 99 AAACATCGCCCAGGAAGCGGGTCTTTCTTTAGGCGCGCTGAGGCACTATT 148
BSNT_02774___ 149 TCTCTACACAGGATGAATTGCTTGCTTT-------TGCAATGAAACTTGT 191
||.|.||.|||||||| ||||| |||.||||.|||.||
RBAM_009910__ 149 TCACCACCCAGGATGA-------GCTTTTAGGGTATGCGATGACACTCGT 191
BSNT_02774___ 192 CCAAGAAAAGGTGACTGACCGAATTAAGGACATTGCAGTGAGGGATTTGC 241
..|||||||.|.|.|.|.|.|||||||.||..||||..|||..|||.|||
RBAM_009910__ 192 AAAAGAAAAAGCGGCCGCCAGAATTAACGAAGTTGCCATGAAAGATCTGC 241
BSNT_02774___ 242 TCCCTAAGGAAAAAGTGTTGCAAATTTTGCTTGAAATGGTCCCAACGAAT 291
..||.||.|||||||.|.|||...|..||||||||||..||||.||..||
RBAM_009910__ 242 CGCCGAAAGAAAAAGCGGTGCGTCTGATGCTTGAAATCATCCCGACAGAT 291
BSNT_02774___ 292 GAAGAAACGATTAGAGAGATGGAGGTTTGGTTTGCTTTTACTGCTTACGC 341
|||||||||||....||.||||||||.|||||.|||||.||.|||||.||
RBAM_009910__ 292 GAAGAAACGATGGCTGAAATGGAGGTATGGTTCGCTTTCACAGCTTATGC 341
BSNT_02774___ 342 CAGACATAA---AAAGGATATGTTTGATGCGAATCATGACGGGATTTTCA 388
||||||||| |.|.|| ||||.|..|..|.||.||||||||.||
RBAM_009910__ 342 CAGACATAAGGGAGAAGA---GTTTCAACCCCAGCAGGACGGGATCTT-- 386
BSNT_02774___ 389 GCGGCAT------GCGGAATCTGATTGCCTATTTAGATG--AATCCGATT 430
||||| |||| ||||||||.||...|.|||| |||..|.||
RBAM_009910__ 387 --GGCATATATCCGCGG--TCTGATTGACTGGCTGGATGAAAATAAGCTT 432
BSNT_02774___ 431 TACTGAAGCAGAATGCTGATAAAGACATTGAAGCTGAGAGACTTTACGCG 480
|||||.|.||||..|||||||||.||.|||||.||||.|.|.|||||.
RBAM_009910__ 433 --CTGAAACCGAATCTTGATAAAGAGATCGAAGCGGAGAAAATGTACGCC 480
BSNT_02774___ 481 CTTGTTGACGGCTTGGCTTTACATGCCATGCTTGACCCTGTGCG-CGTGA 529
.|.|..|||||.|||||..|.||||||||||||||.||||.||| |.|..
RBAM_009910__ 481 ATCGCCGACGGATTGGCGCTGCATGCCATGCTTGAACCTGAGCGTCTTTC 530
BSNT_02774___ 530 ATAAAGACCGAATTAAG------CGGGTCATTATGCAGCATGTAGAGTCA 573
| ||||| .||| ||.||..|..|.||||||.|.||.||.
RBAM_009910__ 531 A-AAAGA------GAAGATCTCCCGTGTGCTCGTTCAGCATATCGAATCT 573
BSNT_02774___ 574 ATTTGCGTGGAAGGTAAACGTGAGACAGAAGAGAAGGAATAA 615
.||| |.|.| |||
RBAM_009910__ 574 CTTT----------TTATC-TGA------------------- 585
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