Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01654 and RBAM_009880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:19
# Commandline: needle
# -asequence dna-align/BSNT_01654___yhdZ.1.9828.seq
# -bsequence dna-align/RBAM_009880___npdA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01654___yhdZ-RBAM_009880___npdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01654___yhdZ-RBAM_009880___npdA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01654___yhdZ
# 2: RBAM_009880___npdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 775
# Identity: 555/775 (71.6%)
# Similarity: 555/775 (71.6%)
# Gaps: 62/775 ( 8.0%)
# Score: 1945.0
#
#
#=======================================
BSNT_01654___ 1 TTGGAAACATTCAAAAGTATTCTACATGAAGCA--CAG------AGAATT 42
.|||||.|.|| ||| .||||..|.|| ||| .|.||.
RBAM_009880__ 1 GTGGAAGCGTT------TAT--GACATTGATCAATCAGGCGGAACGTATC 42
BSNT_01654___ 43 GTTGTGCTGACAGGAGCGGGAATGAGCACAGAATCAGGGATTCCAGACTT 92
||.||||||||.|||||||||||||||||.|||||.||.|||||.||.||
RBAM_009880__ 43 GTGGTGCTGACGGGAGCGGGAATGAGCACGGAATCCGGCATTCCTGATTT 92
BSNT_01654___ 93 TCGTTCAGCAGGGGGCATTTGGACGGAAGATGCCTCAAGAATGGAAGCAA 142
||||||.||.||.||.||.|||||.|||||..|.||.|||||||||||.|
RBAM_009880__ 93 TCGTTCGGCGGGCGGTATATGGACCGAAGACACATCCAGAATGGAAGCGA 142
BSNT_01654___ 143 TGAGCCTTGATTATTTTTTAAGTCATCCGCGGCTG--TTTTGGCCCAAAT 190
|||||...||.||.|||..|.|.|.|||||| || ||.|||||.||||
RBAM_009880__ 143 TGAGCAGGGAATACTTTGAACGCCGTCCGCG--TGAATTCTGGCCTAAAT 190
BSNT_01654___ 191 TCAAAGAATTGTTCCAGATGAAAATGAGCGGCAGCTTTGAACCGAATGAA 240
|||||.|..|.||.|||||||||||||||||.||||.|||.|||||||..
RBAM_009880__ 191 TCAAACAGCTCTTTCAGATGAAAATGAGCGGAAGCTATGAGCCGAATGCC 240
BSNT_01654___ 241 GGCCATTTGTTTTTAGCTGAGCTGGAGAAGCAAGGGAAGCAGGTCAATAT 290
||||||..||.|||.||.||.||.||.||||..||.||||||||..|.||
RBAM_009880__ 241 GGCCATACGTATTTGGCGGATCTTGAAAAGCGGGGAAAGCAGGTAGACAT 290
BSNT_01654___ 291 TTTTACGCAAAACATTGACGGTCTTCATAAAAAAGCGGGGAGCAGGCA-T 339
|||.|||||.||.||||||||.||.|||||.||||||||.|||| ||| |
RBAM_009880__ 291 TTTCACGCAGAATATTGACGGGCTGCATAAGAAAGCGGGAAGCA-GCAGT 339
BSNT_01654___ 340 GTATACGAACTGCATGGTTCTATCCAGACAGCAGCTTG-TCCGGCATGCG 388
||.||.||.||.||.|||||.||.|||||.||.||.|| .||.|| ||||
RBAM_009880__ 340 GTCTATGAGCTTCACGGTTCAATTCAGACCGCCGCATGCCCCCGC-TGCG 388
BSNT_01654___ 389 GCGCCCGATATGATCTTCCCCATTTGCTGGAGCGGGAGGTGCCGGAGTGC 438
|.||.||.||.|..|||.|.|||.|||||.||...||.||||||||.||.
RBAM_009880__ 389 GAGCGCGCTACGGGCTTTCTCATCTGCTGAAGGACGAAGTGCCGGAATGT 438
BSNT_01654___ 439 ACGGCGG---CCGGAAACAATGGGGACATTTGCGGAACGGTATTAAAAAC 485
|||||.| .|||..|..|||.|| |.|||||.||.|||||||||||
RBAM_009880__ 439 ACGGCCGAAATCGGTGATCATGCGG---TATGCGGCACCGTATTAAAAAC 485
BSNT_01654___ 486 CGATGTTGTTCTCTTTGGCGA-CGCCGTCATGCACTTTGACACCCTTTAT 534
.|||||.||.||.||.||||| |.|..||| |||.|||||.|||||||||
RBAM_009880__ 486 GGATGTCGTGCTGTTCGGCGATCTCGTTCA-GCATTTTGAAACCCTTTAT 534
BSNT_01654___ 535 GAAAAGCTGGATCAAGCAGATCTT-TTATTGGTTATCGGCACGTCTCTCG 583
||||||||.|||.||||.|||||| ||.|| ||.||||||||.||.||.|
RBAM_009880__ 535 GAAAAGCTTGATAAAGCTGATCTTCTTCTT-GTGATCGGCACTTCGCTTG 583
BSNT_01654___ 584 AAGTGGCTCCGGCTAGATTTGTGCCTGAGGATGCAAGTCTGATTCCCGGC 633
|||||||.|||||.||.|||||.|||||||||||..|.|.|||||||||.
RBAM_009880__ 584 AAGTGGCGCCGGCAAGGTTTGTCCCTGAGGATGCGGGCCGGATTCCCGGT 633
BSNT_01654___ 634 ATGAAGAAAGTCATCATAAACCTTGAACCAACGTATTGCGACAGCTTGTT 683
.|||||.|.||.|||||.||||||||.||.||.|||||||||...||.||
RBAM_009880__ 634 TTGAAGCAGGTGATCATTAACCTTGAGCCGACATATTGCGACCATTTATT 683
BSNT_01654___ 684 TGACATGGTCATCCATCAAAAAATCGGCGAGTTTGC-------------- 719
|||..|.|||||||||.|.||.|||||.||.|||||
RBAM_009880__ 684 TGATCTTGTCATCCATGAGAAGATCGGTGAATTTGCAAAACGGATCAGCG 733
BSNT_01654___ 720 CCGAAGTTTGGGCATAAAAAAGTGA 744
||| .|.|||||
RBAM_009880__ 734 CCG------CGACATAA-------- 744
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