Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01654 and RBAM_009880

See Amino acid alignment / Visit BSNT_01654 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:19
# Commandline: needle
#    -asequence dna-align/BSNT_01654___yhdZ.1.9828.seq
#    -bsequence dna-align/RBAM_009880___npdA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01654___yhdZ-RBAM_009880___npdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01654___yhdZ-RBAM_009880___npdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01654___yhdZ
# 2: RBAM_009880___npdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 775
# Identity:     555/775 (71.6%)
# Similarity:   555/775 (71.6%)
# Gaps:          62/775 ( 8.0%)
# Score: 1945.0
# 
#
#=======================================

BSNT_01654___      1 TTGGAAACATTCAAAAGTATTCTACATGAAGCA--CAG------AGAATT     42
                     .|||||.|.||      |||  .||||..|.||  |||      .|.||.
RBAM_009880__      1 GTGGAAGCGTT------TAT--GACATTGATCAATCAGGCGGAACGTATC     42

BSNT_01654___     43 GTTGTGCTGACAGGAGCGGGAATGAGCACAGAATCAGGGATTCCAGACTT     92
                     ||.||||||||.|||||||||||||||||.|||||.||.|||||.||.||
RBAM_009880__     43 GTGGTGCTGACGGGAGCGGGAATGAGCACGGAATCCGGCATTCCTGATTT     92

BSNT_01654___     93 TCGTTCAGCAGGGGGCATTTGGACGGAAGATGCCTCAAGAATGGAAGCAA    142
                     ||||||.||.||.||.||.|||||.|||||..|.||.|||||||||||.|
RBAM_009880__     93 TCGTTCGGCGGGCGGTATATGGACCGAAGACACATCCAGAATGGAAGCGA    142

BSNT_01654___    143 TGAGCCTTGATTATTTTTTAAGTCATCCGCGGCTG--TTTTGGCCCAAAT    190
                     |||||...||.||.|||..|.|.|.||||||  ||  ||.|||||.||||
RBAM_009880__    143 TGAGCAGGGAATACTTTGAACGCCGTCCGCG--TGAATTCTGGCCTAAAT    190

BSNT_01654___    191 TCAAAGAATTGTTCCAGATGAAAATGAGCGGCAGCTTTGAACCGAATGAA    240
                     |||||.|..|.||.|||||||||||||||||.||||.|||.|||||||..
RBAM_009880__    191 TCAAACAGCTCTTTCAGATGAAAATGAGCGGAAGCTATGAGCCGAATGCC    240

BSNT_01654___    241 GGCCATTTGTTTTTAGCTGAGCTGGAGAAGCAAGGGAAGCAGGTCAATAT    290
                     ||||||..||.|||.||.||.||.||.||||..||.||||||||..|.||
RBAM_009880__    241 GGCCATACGTATTTGGCGGATCTTGAAAAGCGGGGAAAGCAGGTAGACAT    290

BSNT_01654___    291 TTTTACGCAAAACATTGACGGTCTTCATAAAAAAGCGGGGAGCAGGCA-T    339
                     |||.|||||.||.||||||||.||.|||||.||||||||.|||| ||| |
RBAM_009880__    291 TTTCACGCAGAATATTGACGGGCTGCATAAGAAAGCGGGAAGCA-GCAGT    339

BSNT_01654___    340 GTATACGAACTGCATGGTTCTATCCAGACAGCAGCTTG-TCCGGCATGCG    388
                     ||.||.||.||.||.|||||.||.|||||.||.||.|| .||.|| ||||
RBAM_009880__    340 GTCTATGAGCTTCACGGTTCAATTCAGACCGCCGCATGCCCCCGC-TGCG    388

BSNT_01654___    389 GCGCCCGATATGATCTTCCCCATTTGCTGGAGCGGGAGGTGCCGGAGTGC    438
                     |.||.||.||.|..|||.|.|||.|||||.||...||.||||||||.||.
RBAM_009880__    389 GAGCGCGCTACGGGCTTTCTCATCTGCTGAAGGACGAAGTGCCGGAATGT    438

BSNT_01654___    439 ACGGCGG---CCGGAAACAATGGGGACATTTGCGGAACGGTATTAAAAAC    485
                     |||||.|   .|||..|..|||.||   |.|||||.||.|||||||||||
RBAM_009880__    439 ACGGCCGAAATCGGTGATCATGCGG---TATGCGGCACCGTATTAAAAAC    485

BSNT_01654___    486 CGATGTTGTTCTCTTTGGCGA-CGCCGTCATGCACTTTGACACCCTTTAT    534
                     .|||||.||.||.||.||||| |.|..||| |||.|||||.|||||||||
RBAM_009880__    486 GGATGTCGTGCTGTTCGGCGATCTCGTTCA-GCATTTTGAAACCCTTTAT    534

BSNT_01654___    535 GAAAAGCTGGATCAAGCAGATCTT-TTATTGGTTATCGGCACGTCTCTCG    583
                     ||||||||.|||.||||.|||||| ||.|| ||.||||||||.||.||.|
RBAM_009880__    535 GAAAAGCTTGATAAAGCTGATCTTCTTCTT-GTGATCGGCACTTCGCTTG    583

BSNT_01654___    584 AAGTGGCTCCGGCTAGATTTGTGCCTGAGGATGCAAGTCTGATTCCCGGC    633
                     |||||||.|||||.||.|||||.|||||||||||..|.|.|||||||||.
RBAM_009880__    584 AAGTGGCGCCGGCAAGGTTTGTCCCTGAGGATGCGGGCCGGATTCCCGGT    633

BSNT_01654___    634 ATGAAGAAAGTCATCATAAACCTTGAACCAACGTATTGCGACAGCTTGTT    683
                     .|||||.|.||.|||||.||||||||.||.||.|||||||||...||.||
RBAM_009880__    634 TTGAAGCAGGTGATCATTAACCTTGAGCCGACATATTGCGACCATTTATT    683

BSNT_01654___    684 TGACATGGTCATCCATCAAAAAATCGGCGAGTTTGC--------------    719
                     |||..|.|||||||||.|.||.|||||.||.|||||              
RBAM_009880__    684 TGATCTTGTCATCCATGAGAAGATCGGTGAATTTGCAAAACGGATCAGCG    733

BSNT_01654___    720 CCGAAGTTTGGGCATAAAAAAGTGA    744
                     |||      .|.|||||        
RBAM_009880__    734 CCG------CGACATAA--------    744


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01654 and RBAM_009880

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
