Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01651 and RBAM_009860

See Amino acid alignment / Visit BSNT_01651 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:19
# Commandline: needle
#    -asequence dna-align/BSNT_01651.1.9828.seq
#    -bsequence dna-align/RBAM_009860___yhdX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01651-RBAM_009860___yhdX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01651-RBAM_009860___yhdX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01651
# 2: RBAM_009860___yhdX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 145
# Identity:      89/145 (61.4%)
# Similarity:    89/145 (61.4%)
# Gaps:          41/145 (28.3%)
# Score: 365.0
# 
#
#=======================================

BSNT_01651         1 ATGATCCTTTATAATAGCAAAAAAGGAGGCGAGATCATGGGAAAAGGGAG     50
                                                         ||||||||||||||
RBAM_009860__      1 ------------------------------------ATGGGAAAAGGGAG     14

BSNT_01651        51 AATCAGAGTGGAGGAAAGAATTAAAGCCGAAACGGATGCTGAAATGCAAA    100
                     |.|.|.||||||.|||||||||||.||||||||.|||||||||||.||||
RBAM_009860__     15 ATTGAAAGTGGAAGAAAGAATTAAGGCCGAAACCGATGCTGAAATCCAAA     64

BSNT_01651       101 AAGCAACTCTCCTTGATCAGACACAAACGAAAAAAGGTA-AGTGA    144
                     ||||.||||||||..|.|||||||||.| |||.|||..| ||   
RBAM_009860__     65 AAGCGACTCTCCTGAAACAGACACAATC-AAAGAAGAAATAG---    105


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