Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01648 and RBAM_009840

See Amino acid alignment / Visit BSNT_01648 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:19
# Commandline: needle
#    -asequence dna-align/BSNT_01648___ccrB.1.9828.seq
#    -bsequence dna-align/RBAM_009840___yhdV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01648___ccrB-RBAM_009840___yhdV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01648___ccrB-RBAM_009840___yhdV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01648___ccrB
# 2: RBAM_009840___yhdV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 414
# Identity:     275/414 (66.4%)
# Similarity:   275/414 (66.4%)
# Gaps:          36/414 ( 8.7%)
# Score: 831.0
# 
#
#=======================================

BSNT_01648___      1 ATGAAAATATATAGCGCGGTTTTTATCGGAGGCGCGCTTGGCGCCTGCCT     50
                     ||||||..|||.|.|||..|||||||||||||||||||||||||.|..||
RBAM_009840__      1 ATGAAACAATACATCGCAATTTTTATCGGAGGCGCGCTTGGCGCATTGCT     50

BSNT_01648___     51 CCGATACGGATTAAACTTATGG-----ATACACACCGGTCAGTTCCCGGC     95
                     |||.|     ||.||.|.|..|     ||.||||.|.||...||||||||
RBAM_009840__     51 CCGCT-----TTGAAATGAGCGCGCACATTCACAGCAGTTCTTTCCCGGC     95

BSNT_01648___     96 GGCAACCTGGCTGGAAAATGCGGCAGGCAGCCTTCTATTAGGCATTTTGA    145
                     |||.||.|..||.|||||||||||.||.||||||..|.|.||..||.|.|
RBAM_009840__     96 GGCCACTTTCCTCGAAAATGCGGCGGGAAGCCTTTCACTCGGTCTTATTA    145

BSNT_01648___    146 CCGGATTTTTTATGATCGGGGCAAAACGGCCTCTGCTGTCGGCTTTTTTA    195
                     |.||.|.|||.||.||..||||.|||||.|||||..||.|.||.||||||
RBAM_009840__    146 CGGGTTATTTCATCATTCGGGCTAAACGCCCTCTTTTGACCGCCTTTTTA    195

BSNT_01648___    196 GGCACCGGCTTTTGCGGAGGCTTCACAACAATGTCCACGTTTTCTAAGGA    245
                     ||.|||||.|||||||||||.|||||.||.|||||.||.||..|.||.||
RBAM_009840__    196 GGAACCGGTTTTTGCGGAGGTTTCACGACGATGTCAACCTTCGCAAAAGA    245

BSNT_01648___    246 AACGGTGATGCTTTTGCAA-GGACAACCCTCATTGGCTCTTTTATATGTG    294
                     |||..|..|.||..||||| .|.| .|||.||..||||.|||..|||.|.
RBAM_009840__    246 AACCATTTTTCTGCTGCAATCGTC-TCCCGCAGCGGCTTTTTGTTATTTT    294

BSNT_01648___    295 GCAGCCTCATTGATATCAGGGATCATATTTGCACTGATTGGTG-------    337
                     ||.||..||||..|.||.||.||.|...|||||      .|||       
RBAM_009840__    295 GCCGCGACATTAGTCTCTGGCATTACCCTTGCA------TGTGCCGGCAT    338

BSNT_01648___    338 TTTTTGCGGGACGGCGCATAGCAGGCATTCA-GCA-AAGAAAGGGGCTGC    385
                     |||.|| |||||||||.||.||   |.|||| ||| ..|.|||||  .||
RBAM_009840__    339 TTTCTG-GGGACGGCGGATTGC---CCTTCACGCAGCGGGAAGGG--AGC    382

BSNT_01648___    386 AGGAAA---GATGA    396
                     |.||.|   .||||
RBAM_009840__    383 ATGATACGCCATGA    396


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