Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01647 and RBAM_009830
See
Amino acid alignment /
Visit
BSNT_01647 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:19
# Commandline: needle
# -asequence dna-align/BSNT_01647___ccrB.1.9828.seq
# -bsequence dna-align/RBAM_009830___yhdU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01647___ccrB-RBAM_009830___yhdU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01647___ccrB-RBAM_009830___yhdU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01647___ccrB
# 2: RBAM_009830___yhdU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 401
# Identity: 241/401 (60.1%)
# Similarity: 241/401 (60.1%)
# Gaps: 85/401 (21.2%)
# Score: 653.5
#
#
#=======================================
BSNT_01647___ 1 ATGACACT------------------AGCGGGTATTTTCATAGGGGGCGG 32
|||||..| ||||||||| |||
RBAM_009830__ 1 ATGACGATTGTCCTGATGCTTATCGCAGCGGGTAT------------CGG 38
BSNT_01647___ 33 ACTTGGCGCAATGCTTCGGT-TCTGGCTTGG-----CAATGTCATAACCG 76
| |||..|| |.|||| ||| |||.|| ||||.|||.||
RBAM_009830__ 39 A----GCGGTAT--TACGGTCTCT-GCTGGGTAAAACAATTTCAGAA--- 78
BSNT_01647___ 77 CCAAAACCAAAGG---TCTGAGCCTGCCCATTGGCAT-ACTGACAGTCAA 122
|.|||.||||| ||.|| ||||..||||.|| .||| |.|||||
RBAM_009830__ 79 --AGAACAAAAGGTTTTCCGA---TGCCGCTTGGAATGGCTG-CGGTCAA 122
BSNT_01647___ 123 TATTCTCGGAGCTC--TCGGGCTCGGAATATTTACAGGACTTCACGTTGC 170
..|.|||| |||| ||||.|||||.||.||.||.||.||...|.|.|.
RBAM_009830__ 123 CCTGCTCG--GCTCCTTCGGCCTCGGCATGTTCACCGGCCTGGGCCTGGA 170
BSNT_01647___ 171 AAATGCTTCGGTCTCGC-TTATCATCGGCACGGGGTTTTTTGGCGCCTTT 219
.|||.||||.| |..|| |.|||||||..|||||.|||||.||.||.|||
RBAM_009830__ 171 TAATCCTTCTG-CCGGCATCATCATCGCGACGGGCTTTTTCGGTGCGTTT 219
BSNT_01647___ 220 ACGACCTTTTCCACCTTCAGCGTTGAAAGTATTCAACTCCTTATGGCCAA 269
||||||||||||||.|||||..|||||....|.||.||..|.|||..|||
RBAM_009830__ 220 ACGACCTTTTCCACGTTCAGTATTGAAGCCGTGCAGCTGATGATGAACAA 269
BSNT_01647___ 270 ACGTGTAATAGAAAGCATCTTGTACATCGCCCTGACACTTT-----GCGG 314
.||..|||..||||||.|..|.||||||| ||| ||| ||.|
RBAM_009830__ 270 CCGCATAAAGGAAAGCCTGCTCTACATCG--CTG----TTTCAGCAGCCG 313
BSNT_01647___ 315 GTCG-CTTTTGGCATTTTGGTGCGGC-------TGGACAATCACAATATA 356
|..| ||||||||.||.||||||||| || ||..|.||.||
RBAM_009830__ 314 GAAGCCTTTTGGCGTTCTGGTGCGGCTTTGTTATG----ATATCCATTTA 359
BSNT_01647___ 357 A 357
|
RBAM_009830__ 360 A 360
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.