Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01638 and RBAM_009760

See Amino acid alignment / Visit BSNT_01638 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:18
# Commandline: needle
#    -asequence dna-align/BSNT_01638___sigM.1.9828.seq
#    -bsequence dna-align/RBAM_009760___sigM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01638___sigM-RBAM_009760___sigM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01638___sigM-RBAM_009760___sigM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01638___sigM
# 2: RBAM_009760___sigM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 492
# Identity:     448/492 (91.1%)
# Similarity:   448/492 (91.1%)
# Gaps:           0/492 ( 0.0%)
# Score: 2064.0
# 
#
#=======================================

BSNT_01638___      1 GTGACGATCGATGAAATTTACCAAATGTACATGAATGATGTTTACAGGTT     50
                     |||||||||||||||||||||||||||||.|||||||||||||||.||||
RBAM_009760__      1 GTGACGATCGATGAAATTTACCAAATGTATATGAATGATGTTTACCGGTT     50

BSNT_01638___     51 CCTGCTCTCCATGACAAAAGACAAGCATCTTGCTGAAGACTTGCTGCAGG    100
                     ||||||||||||||||||||||||||||||.||||||||.||||||||||
RBAM_009760__     51 CCTGCTCTCCATGACAAAAGACAAGCATCTCGCTGAAGATTTGCTGCAGG    100

BSNT_01638___    101 AAACCTTTATGCGGGCATACATACACATTCACTCCTATGATCACAGCAAA    150
                     |||||||||||.|||||||||||||||||||||||||.||.|||||||||
RBAM_009760__    101 AAACCTTTATGAGGGCATACATACACATTCACTCCTACGACCACAGCAAA    150

BSNT_01638___    151 GTAAAGCCCTGGCTTTTTCAAGTGGCGCGAAACGCCTTCATTGATTACGT    200
                     ||||||||.||||||||||||||||||.||||.||.||.||.|||||.||
RBAM_009760__    151 GTAAAGCCATGGCTTTTTCAAGTGGCGAGAAATGCGTTTATAGATTATGT    200

BSNT_01638___    201 CAGAAAGCATAAGAAAGAAGTAACCATTTCTGATGACTTAATCGGAAGCC    250
                     ||||||.|||||.||.|||||.||||||||.|||||||||||.||.||||
RBAM_009760__    201 CAGAAAACATAAAAAGGAAGTGACCATTTCCGATGACTTAATTGGGAGCC    250

BSNT_01638___    251 TCTTTCAAAATGCTGTTCAAAGTCCTGCCCATCAGGTAGAGATAAAGGAA    300
                     |.|||||.|..|||||||||||.||.||.||||||.|.||.||.||||||
RBAM_009760__    251 TTTTTCAGACGGCTGTTCAAAGCCCGGCTCATCAGATTGAAATCAAGGAA    300

BSNT_01638___    301 GTGCTGACTGGTTATATGTCCGAGCTCCCCGATAATTATCGGGAGGCCTT    350
                     ||||||||.||.|||||||||||.||.|||||.|||||||||||||||||
RBAM_009760__    301 GTGCTGACAGGGTATATGTCCGAACTTCCCGACAATTATCGGGAGGCCTT    350

BSNT_01638___    351 AACGCTATATTATTTAAAAGAGTTAAACTACAAAGAAGCATCCCATATTA    400
                     |||.||.||||||||||||||..|.||.||||||||||||||||||||||
RBAM_009760__    351 AACACTGTATTATTTAAAAGAACTGAATTACAAAGAAGCATCCCATATTA    400

BSNT_01638___    401 TGAATATTTCAGAGGCGAATTTTAAAAGTGTTTTATTTCGTGCCAGACAG    450
                     ||||||||||||||||.|||||||||||||||||||||||||||||||||
RBAM_009760__    401 TGAATATTTCAGAGGCTAATTTTAAAAGTGTTTTATTTCGTGCCAGACAG    450

BSNT_01638___    451 CGGCTGAAAGCACTTTATAATAGAGGTGTTAATGATGAATGA    492
                     ||||||||||||||||||||||||||||||||||||||||||
RBAM_009760__    451 CGGCTGAAAGCACTTTATAATAGAGGTGTTAATGATGAATGA    492


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