Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01631 and RBAM_009730
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:18
# Commandline: needle
# -asequence dna-align/BSNT_01631___yhdH.1.9828.seq
# -bsequence dna-align/RBAM_009730___yhdH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01631___yhdH-RBAM_009730___yhdH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01631___yhdH-RBAM_009730___yhdH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01631___yhdH
# 2: RBAM_009730___yhdH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1384
# Identity: 1013/1384 (73.2%)
# Similarity: 1013/1384 (73.2%)
# Gaps: 56/1384 ( 4.0%)
# Score: 3615.5
#
#
#=======================================
BSNT_01631___ 1 TTGTCTGAGCAAAAAACAGTCCAATGGGCTTCGAAAATTGGTTTCGTCAT 50
.|||||||.|||||||..||.||||||||.||.|||||.||.||..|.||
RBAM_009730__ 1 GTGTCTGACCAAAAAAGGGTTCAATGGGCCTCAAAAATAGGATTTATTAT 50
BSNT_01631___ 51 GGCAGCGGCCGGCTCGGCTATCGGCTTGGGCGCGATTTGGAAGTTCCCTT 100
|||.||.|||||.|||||.||||||.||||.||.||||||||||||||||
RBAM_009730__ 51 GGCCGCTGCCGGTTCGGCGATCGGCCTGGGAGCCATTTGGAAGTTCCCTT 100
BSNT_01631___ 101 ACGTAGCGGGGACCAATGGGGGAGGAGCCTTTTTTCTTATCTTCGTGTTA 150
||||||||||.||.||.||||||||.||.|||||||||.|.|||||..|.
RBAM_009730__ 101 ACGTAGCGGGTACGAACGGGGGAGGCGCTTTTTTTCTTGTATTCGTCCTC 150
BSNT_01631___ 151 TTTACCATCCTCTTAGGCTATCCGCTTTTGGTGGGGGAATTTATTTTTGG 200
||||||.|.||.||||||||||||||||||.|.||.|||||||||||.||
RBAM_009730__ 151 TTTACCGTGCTTTTAGGCTATCCGCTTTTGCTCGGTGAATTTATTTTCGG 200
BSNT_01631___ 201 AAGACGGAACCAGACGAATGCCATTGATGCATATAAAAAAGAAGCGCCGC 250
||||||||.||||||.|||||.||||||||.||.|||.|||..||||||.
RBAM_009730__ 201 AAGACGGAGCCAGACAAATGCGATTGATGCCTACAAACAAGCCGCGCCGA 250
BSNT_01631___ 251 GATCAGCTTGGTTTCTTACGGG----GTGGATCGGCGTAGCCGCGTGTTT 296
..||.|..|||...||.||||| ||| ||.||.||.||.|||||
RBAM_009730__ 251 AGTCGGTATGGCACCTCACGGGTTATGTG----GGTGTGGCGGCCTGTTT 296
BSNT_01631___ 297 CTTAGTGCTGTCGTTTTACAGTGTAATCGGGGGATGGATTTTGCTGTATA 346
.|||||..||||.|||||||||||..||||.||.|||||||||||.|||.
RBAM_009730__ 297 TTTAGTTTTGTCTTTTTACAGTGTTGTCGGCGGGTGGATTTTGCTTTATG 346
BSNT_01631___ 347 TCGTAAAAACAGCGT--CAGGATCACTGTCCGGGCTTTCTCAAGCACAGT 394
|..|||||.| ||| |.||.||..|.||||||||..||||.|..||||
RBAM_009730__ 347 TGTTAAAAGC--CGTTACCGGTTCTTTATCCGGGCTCACTCAGGAGCAGT 394
BSNT_01631___ 395 ATGGCGCTCTTTTTGCTTCTATTATCCAAAATCCGGTGCAGACGCTCGCG 444
|.|||.|..|.||.|...|..|.||..||||||||.|.|||||.|||...
RBAM_009730__ 395 ACGGCACGGTGTTCGGGACGGTCATTGAAAATCCGATCCAGACTCTCATT 444
BSNT_01631___ 445 GCTCAGCTTGTCTTTATG-GCACTGACTGTACTCGTTGTCGCAAGAGGGG 493
||.||||||||.|||||| .|| ||||.||....||.|||||||.|||.|
RBAM_009730__ 445 GCGCAGCTTGTATTTATGATCA-TGACGGTGGCGGTCGTCGCAAAAGGCG 493
BSNT_01631___ 494 TTCAAAAAGGGATTGAACGGGTAAGCGCGGTGATGATGCCGATTTTGTTT 543
|.||.||||||||||||||.||.||.||||||.|||||||||||||.||.
RBAM_009730__ 494 TGCAGAAAGGGATTGAACGTGTCAGTGCGGTGCTGATGCCGATTTTATTC 543
BSNT_01631___ 544 TTATTGTTTATTCTGCTCGTTCTTCGGTCTCTTACGCTTAATGGTGCAAT 593
.|..|||||.|..||||.||.||.||.||..|.|||||..||..|||..|
RBAM_009730__ 544 GTGCTGTTTCTATTGCTTGTGCTGCGATCAGTCACGCTCGATCATGCCGT 593
BSNT_01631___ 594 GGAAGGCGTAAAGTTTCTGCTTGTGCCTCATTTCGGCGATTTGACTCCGG 643
.||.||..|.|..|||.|..|.||.||.||.||.|..||||||||.||||
RBAM_009730__ 594 TGAGGGGATTAGATTTTTATTGGTTCCGCACTTTGAAGATTTGACGCCGG 643
BSNT_01631___ 644 AATCCATATTATTCGGGCTGGGACAGGCCTTCTTTACGTTAACACTGGGG 693
|||||||..|||..|...|.||||||||.||.|||||.|||||.||.||.
RBAM_009730__ 644 AATCCATCCTATATGCTTTAGGACAGGCGTTTTTTACATTAACGCTCGGT 693
BSNT_01631___ 694 GTTTCGGTGATGGTGACCTACAGCTCCTATTTGCCGAAAACACAAAATAT 743
||||||||.||||||||.|||||.||.|||.||||||||||.||||||.|
RBAM_009730__ 694 GTTTCGGTCATGGTGACATACAGTTCGTATCTGCCGAAAACCCAAAATCT 743
BSNT_01631___ 744 CCCTCGTTCGGCAGCCTCCATTGTCTTGATGAATATCATTGTGACACTCT 793
.||..|||||||.|..||||||||..||||||||.|..|.||.||.||.|
RBAM_009730__ 744 TCCGGGTTCGGCGGGTTCCATTGTTATGATGAATGTGCTCGTTACGCTGT 793
BSNT_01631___ 794 TGGCAGGTTTGGCTATTTTTCCGGCGGTTTTCTCATTCGGTTTTCAGCCA 843
|.||.||..||||.|||||.|||||||||||.||.|||||.|||.|.||.
RBAM_009730__ 794 TTGCGGGACTGGCCATTTTCCCGGCGGTTTTTTCGTTCGGCTTTAAACCG 843
BSNT_01631___ 844 AATGAAGGACCGACATTGCTGTTTACAGTGCTTCCGGCCGTTTTTGAACA 893
.|||||||.||.|||.||||||||||.|||||.|||||.||||||||.|.
RBAM_009730__ 844 GATGAAGGGCCTACACTGCTGTTTACCGTGCTGCCGGCTGTTTTTGACCG 893
BSNT_01631___ 894 GCTTCCGTTCGGCACGTTGTTTTTTATCGGCTTTCTCGTTGCATTTTTAT 943
|||.|||||||||.||.|||||||||||.|||||.|.|..|..|||||.|
RBAM_009730__ 894 GCTGCCGTTCGGCTCGCTGTTTTTTATCAGCTTTTTGGCGGTCTTTTTCT 943
BSNT_01631___ 944 TTGCAGCCTTAACCTCAGCATTTTCGATGGTTGAAATTATCGTTGCCACA 993
|.||.||..|.||.||.||.|||||||||||.|||||||||||.||.||.
RBAM_009730__ 944 TCGCCGCGCTGACTTCGGCCTTTTCGATGGTGGAAATTATCGTGGCGACT 993
BSNT_01631___ 994 ATCGGAAAAGGGGATGAAAAGAAGAGAAAAAAACTGTCATGGACGAGCGG 1043
.||||.|||||.|||||||.|||.|||||.||.|||||.|||||.|||||
RBAM_009730__ 994 GTCGGGAAAGGTGATGAAACGAAAAGAAAGAAGCTGTCGTGGACAAGCGG 1043
BSNT_01631___ 1044 GCTTTTGATCTTTTTGGTCGGAATCCCATGCTGCTTGTCTTATGGTGTTT 1093
.||..|.||.||.||.||||||||.||.|.|||.||.||.||.||||||.
RBAM_009730__ 1044 TCTGCTCATTTTCTTAGTCGGAATTCCGTCCTGTTTATCATACGGTGTTC 1093
BSNT_01631___ 1094 TGAGTGATGTGCACCTATTTGGCAAAACGTTTTTTGATATTGCCGATTTT 1143
|..|||||||.||..|.||.||.|||||||||||||||.||||.|||||.
RBAM_009730__ 1094 TCGGTGATGTTCATTTGTTCGGAAAAACGTTTTTTGATCTTGCGGATTTC 1143
BSNT_01631___ 1144 ACCGTCAGCAATGTTTTGATGCC-TTCAGGCGCTCTGTTAATTTCTCTAT 1192
||||||||||||||..||||.|| .|| ||||||.|.|||||.||..|.|
RBAM_009730__ 1144 ACCGTCAGCAATGTGCTGATTCCGCTC-GGCGCTTTATTAATATCAATCT 1192
BSNT_01631___ 1193 TTATCCCGCTGAAAATTTCGAAAAGC--GAACTCTTGGCTGAAATGCGAA 1240
|..|||||||||||||..|| |||| ||.||.||.||.||
RBAM_009730__ 1193 TCGTCCCGCTGAAAATACCG--AAGCAGGAGCTGTTTGCCGA-------- 1232
BSNT_01631___ 1241 ATGGATCAAATGCAGGTAAAGC------------ATTCTTTTACACATGG 1278
|||.|||.|| |||...|| .||||||.| ||
RBAM_009730__ 1233 ---GATGAAAAGC-GGTTCCGCCATCGGCTATCGTTTCTTTCA-----GG 1273
BSNT_01631___ 1279 TTT--TATTTGCTTCGT----TTTATCGTGCCGCTTGCCATTATTATCGT 1322
|.| |||||.|||| | |.|.||||||||||.||.||.||..||||
RBAM_009730__ 1274 TGTGGTATTTCCTTC-TGAAATATCTCGTGCCGCTGGCGATCATCGTCGT 1322
BSNT_01631___ 1323 GTTCTTAAATTTAATCGGAATTTTATCATTTTAA 1356
.||..|..||||||||||..||.|.|||||||||
RBAM_009730__ 1323 ATTGCTGCATTTAATCGGCGTTCTTTCATTTTAA 1356
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