Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01627 and RBAM_009710

See Amino acid alignment / Visit BSNT_01627 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence dna-align/BSNT_01627___yhdF.1.9828.seq
#    -bsequence dna-align/RBAM_009710___yhdF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01627___yhdF-RBAM_009710___yhdF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01627___yhdF-RBAM_009710___yhdF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01627___yhdF
# 2: RBAM_009710___yhdF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 897
# Identity:     643/897 (71.7%)
# Similarity:   643/897 (71.7%)
# Gaps:          54/897 ( 6.0%)
# Score: 2226.5
# 
#
#=======================================

BSNT_01627___      1 GTGAACCCAATGGACAGACAAACAGAAGGACAAGAACCGCAGCATCAGGA     50
                     .||||.||.|||||||||||.||.|||||||||.|.||||||...||..|
RBAM_009710__      1 ATGAATCCGATGGACAGACAGACGGAAGGACAAAAGCCGCAGGTGCAAAA     50

BSNT_01627___     51 CAGACAGCCGGGCATTGAGTCAAAAATGAATCCGCTGCCGCTGTCAGAGG    100
                     ..|.|||||.||||||||||||.|.|||.|.|||...|||||.|..||||
RBAM_009710__     51 GCGCCAGCCCGGCATTGAGTCAGACATGGAGCCGAAACCGCTCTTGGAGG    100

BSNT_01627___    101 ACGAGGAT-TA------TCGAGGAAGCGGAAAACTGAAAGGAAAAGTCGC    143
                     ||..|||| ||      |||       ||.|.|.|.||||||||||||||
RBAM_009710__    101 ACCCGGATGTAAAAGGGTCG-------GGCAGATTAAAAGGAAAAGTCGC    143

BSNT_01627___    144 GATCATTACTGGAGGCGACAGCGGAATAGGGAGAGCAGCAGCTATTGCCT    193
                     ..||||.||.||.||.||||||||.||.||...|||.||.||.||.||.|
RBAM_009710__    144 CGTCATCACGGGCGGAGACAGCGGCATCGGCGCAGCGGCTGCGATCGCTT    193

BSNT_01627___    194 TTGCTAAAGAGGGGGCTGATATCTCCATTCTATACTTAGACGAGCATTCG    243
                     ..||.||.||.||.||.|||.|..||||.||.|||.|||||||.|||.|.
RBAM_009710__    194 ACGCGAAGGAAGGAGCGGATCTTGCCATCCTGTACCTAGACGAACATGCC    243

BSNT_01627___    244 GACGCAGAG-GAAACACGTAAA------CGGATCGAAAAGGAGAAT----    282
                     ||.||.||| ||   |||.|||      ||||         |||||    
RBAM_009710__    244 GATGCTGAGAGA---ACGAAAAAGCGTGCGGA---------AGAATACCA    281

BSNT_01627___    283 GTCCG-CTGCCTGCTTATCGCGGGAGATGTCGGGGACGAAAACCATTGTG    331
                     |.||| .||||||.|.||..|||||||.|||||.||.||....||||||.
RBAM_009710__    282 GGCCGAATGCCTGTTAATTCCGGGAGACGTCGGTGATGAGGCGCATTGTC    331

BSNT_01627___    332 AACAAGCTGTGCAGCAAACAGTC---GACCATTTTGGTAAACTCGATATC    378
                     |..|.||.||.|.|||   ||||   ||.||.|..||.|||.|.|||||.
RBAM_009710__    332 AGAAGGCGGTCCGGCA---AGTCTTAGATCACTACGGAAAAATAGATATT    378

BSNT_01627___    379 TTAGTGAACAACGCCGCTGAACAGCATCCCCAGGACAGCATTCTCAATAT    428
                     .|.||.||.||.||.|||||.||||||||.||..||.|.|||||..||||
RBAM_009710__    379 CTCGTTAATAATGCGGCTGAGCAGCATCCGCAAAACGGGATTCTTGATAT    428

BSNT_01627___    429 TTCAACAGAACAGCTGGAAAAAACCTATCGCACAAATATTTTTTCCATGT    478
                     |.||.|.|||||||||||.||.||.|..||.|||||.||.|||||.||||
RBAM_009710__    429 TACAGCTGAACAGCTGGAGAAGACATTCCGTACAAACATGTTTTCTATGT    478

BSNT_01627___    479 TTCATATGACGAAGAAAGC---TTTGCCTCACCTGCAAGAG-GGGAGTGC    524
                     ||||||||||   .|||||   ..||||.||||||||| || |||||.||
RBAM_009710__    479 TTCATATGAC---AAAAGCCGTGCTGCCCCACCTGCAA-AGAGGGAGCGC    524

BSNT_01627___    525 CATTATTAATACGACATCGATTACCGCTTATGAAGGGGATACGGCGTTAA    574
                     |||.||||||||.||.||.||||||||||||.|.||.||.||..|.||.|
RBAM_009710__    525 CATCATTAATACAACGTCTATTACCGCTTATCAGGGAGACACATCATTGA    574

BSNT_01627___    575 TTGATTATTCCAGCAC-AAAGGGTGCGATTGTTTCCTTTACGCGTTCCAT    623
                     |.||.|||||..|||| |||||..|| ||.|||||||||||||||||.||
RBAM_009710__    575 TCGACTATTCATGCACGAAAGGCGGC-ATCGTTTCCTTTACGCGTTCAAT    623

BSNT_01627___    624 GGCGAAGTCGCTCGCAGATAAAGGCATCAGAGTGAATGCGGTGGCGCCCG    673
                     |||||.|||..|.||.|||.|.||.||||||||.|||||||||||.||.|
RBAM_009710__    624 GGCGATGTCATTGGCCGATCAGGGGATCAGAGTAAATGCGGTGGCCCCTG    673

BSNT_01627___    674 GTCCGATTTGGACACCGCTTATTCCGGCGACATTCCCTAAGGAAAAAGTG    723
                     |.|||||.|||||..|.||.||||||||.||.||..||.|.|||||.|||
RBAM_009710__    674 GCCCGATCTGGACCGCCCTGATTCCGGCAACGTTTACTGAAGAAAAGGTG    723

BSNT_01627___    724 AAACAGCACGGCTTGGATACCCCAATGGGAAGACCGGGACAGCCGGTTGA    773
                     .||.||||.||..||||.||.||.||||||||||||||||||||.|..||
RBAM_009710__    724 GAAAAGCATGGTCTGGACACTCCGATGGGAAGACCGGGACAGCCTGCGGA    773

BSNT_01627___    774 GCATGCAGGCGCCTATGTTCTGCTGGCGTCTGACGAATCTTCCTATATGA    823
                     .||.||.||.||.||.||.||.|||||.||.|||||||||||||||||||
RBAM_009710__    774 ACACGCGGGAGCTTACGTGCTTCTGGCTTCAGACGAATCTTCCTATATGA    823

BSNT_01627___    824 CAGGGCAGACCATTCATGTGAATGGCGGACGTTTTATTTCAACGTGA    870
                     |.|||||.||||||||.||.||||||||..|.|||||||||||.|.|
RBAM_009710__    824 CGGGGCAAACCATTCACGTAAATGGCGGCAGATTTATTTCAACATAA    870


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01627 and RBAM_009710

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
