Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01611 and RBAM_009620

See Amino acid alignment / Visit BSNT_01611 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:16
# Commandline: needle
#    -asequence dna-align/BSNT_01611___yhdC.1.9828.seq
#    -bsequence dna-align/RBAM_009620___yhdC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01611___yhdC-RBAM_009620___yhdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01611___yhdC-RBAM_009620___yhdC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01611___yhdC
# 2: RBAM_009620___yhdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 339
# Identity:     233/339 (68.7%)
# Similarity:   233/339 (68.7%)
# Gaps:          30/339 ( 8.8%)
# Score: 732.0
# 
#
#=======================================

BSNT_01611___      1 ATGAAATCTCTGCCGTATACCATTGCGCT-----TCTT-TTTTGCGG-AT     43
                     ||||||||.||.||.|      |||||||     |||| |||||||| ||
RBAM_009620__      1 ATGAAATCCCTTCCAT------TTGCGCTTGCCCTCTTGTTTTGCGGCAT     44

BSNT_01611___     44 TGATTATCGTGTCAATGGCTGCAAAAGGTCATTCAACGGACAC---AAAC     90
                     | .|.||.|..||.||.||||.||||||.|||.||  |.||||   .|.|
RBAM_009620__     45 T-CTCATTGCCTCGATCGCTGAAAAAGGGCATACA--GAACACCTTGATC     91

BSNT_01611___     91 GAGTCCGTTCAAAAGTGGGAACAGCTTGCCTGGAGCAAAATTCAGGATGA    140
                     .| ||.|||.||||.|||||.|||||.||.||||.|.|..||.|...|||
RBAM_009620__     92 CA-TCAGTTGAAAAATGGGAGCAGCTCGCATGGAACCAGCTTGAACGTGA    140

BSNT_01611___    141 ATATAAGGGCGCTTCATTTTCTGATTATGCTTATATGGGGCGTACAGAGG    190
                     |||.|||||.||.....||.|.||||||.|.||.|||||.||||||.|.|
RBAM_009620__    141 ATACAAGGGGGCCGAGCTTACCGATTATTCGTACATGGGCCGTACAAAAG    190

BSNT_01611___    191 TGAATGATC----AGCAGACGAAAGATGTCTTTCGGGTGACAGT-CAGAC    235
                     |.||    |    |.|||||||||||.||.|||||.||.||.|| ||.||
RBAM_009620__    191 TAAA----CCGGGAACAGACGAAAGACGTGTTTCGCGTAACGGTGCAAAC    236

BSNT_01611___    236 AGAAAGATGACACTTTTTCTGTTCGGGCCGAAGTCTATTTTCATCCGGTG    285
                     ||.|| |.||.||.|||||....||.||.|||||.|||||.|||||.|||
RBAM_009620__    237 AGCAA-AAGAAACGTTTTCATCCCGTGCTGAAGTGTATTTCCATCCCGTG    285

BSNT_01611___    286 ACAAATCATATGATCAGCATCAACGTCTTTAGGCTCTAA    324
                     |||||.|||.||||||||||.||..|.||.||.||.|||
RBAM_009620__    286 ACAAAACATGTGATCAGCATTAATATTTTCAGACTGTAA    324


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