Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01609 and RBAM_009600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01609___yhdA.1.9828.seq
# -bsequence dna-align/RBAM_009600___yhdA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01609___yhdA-RBAM_009600___yhdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01609___yhdA-RBAM_009600___yhdA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01609___yhdA
# 2: RBAM_009600___yhdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity: 382/540 (70.7%)
# Similarity: 382/540 (70.7%)
# Gaps: 27/540 ( 5.0%)
# Score: 1260.0
#
#
#=======================================
BSNT_01609___ 1 ---ATGAACATGTTAGTCATAAATGGCACGCCTAGAAAACATGGCAGAAC 47
||||.|||.|||||.||.|..||.||.||.||||||.|.||..|.||
RBAM_009600__ 1 ATGATGAGCATATTAGTGATCAGCGGAACACCGAGAAAAAACGGGCGGAC 50
BSNT_01609___ 48 AAGAATTGCAGCATCCTATATTGCAGCTCTGTATCACACGGATTTGATTG 97
.||||||||.||.||.|||||...||.||.||.|||.||.|||||.||||
RBAM_009600__ 51 TAGAATTGCCGCTTCTTATATAAGAGATCGGTTTCATACCGATTTTATTG 100
BSNT_01609___ 98 ATCTAAGCGAGTTTGTATTGCCCGTTTTTAACGGTGAAGCGGATCA-ATC 146
||.|.|||||...||.|.||||..|||.|||||||||||..||.|| |.|
RBAM_009600__ 101 ATTTGAGCGAAAGTGAACTGCCGCTTTATAACGGTGAAGAAGAACAGAAC 150
BSNT_01609___ 147 TGAACTGTTGAAAGTACAGGAGCTTAAGAAACGCGTTACG----AAAG-C 191
||.|||...|.|||.||.||| ||||| |||..|.| |||| |
RBAM_009600__ 151 -GAGCTGCCTACAGTGCAAGAG-TTAAG----GCGGCAGGTGAAAAAGTC 194
BSNT_01609___ 192 GGATGCGATTGTATTATTATCGCCTGAATATCACAGCGGCATGAGCGGCG 241
||..||..|.||.||||||||.||.||.||||||||||||||||||||||
RBAM_009600__ 195 GGCGGCCGTCGTCTTATTATCTCCCGAGTATCACAGCGGCATGAGCGGCG 244
BSNT_01609___ 242 CTTTAAAAAATGCTTTGGATTTTCTAAGCAGCGAACAATTCAAATATAAG 291
||||||||||.||..|.||||||.||||||||||.||.|....|||.||.
RBAM_009600__ 245 CTTTAAAAAACGCCATCGATTTTTTAAGCAGCGATCACTGGGCATACAAA 294
BSNT_01609___ 292 CCCGTTGC-ATTATTGGCAGTAGCGGGAGGCGGAAAAGGCGGCATCAATG 340
||.||.|| ||.||| ||.|..|||||.||.||||||||.|||||.||.|
RBAM_009600__ 295 CCGGTGGCAATCATT-GCCGCGGCGGGCGGAGGAAAAGGAGGCATGAACG 343
BSNT_01609___ 341 CGCTGAACAATATGAGAACTGTGATGCGGGGTGTCTACGCCAATGTCATT 390
|||||...||||||.|.||.||.||||||||.|||||.||.||||||||.
RBAM_009600__ 344 CGCTGGCGAATATGCGGACGGTCATGCGGGGCGTCTATGCAAATGTCATC 393
BSNT_01609___ 391 CCGAAGCAGCTGGTGCTT-GATCCGGTGCATATTGATGTTGAAAATGC-- 437
|||||.|||||||| ||| ||.|||.|.||.||.||..|.|| ||
RBAM_009600__ 394 CCGAAACAGCTGGT-CTTAGACCCGATTCACATCGACATGGA----GCGC 438
BSNT_01609___ 438 --TACAGTGGCTGAAAACATTAAGGAAAGCATAAAAGAGCTTGTCGAAGA 485
.||.||..||||..|.||....|..|||.|.||||||.|..|||||||
RBAM_009600__ 439 CGGACCGTATCTGAGGATATGGCTGTCAGCCTGAAAGAGATGATCGAAGA 488
BSNT_01609___ 486 ACTCAGCATGTTCGCAAAAACAGGAAATCCCGGCGTCTAA 525
.||.|..||||||.||||.|.|.|||||||||||||||.|
RBAM_009600__ 489 GCTGAATATGTTCACAAACATAAGAAATCCCGGCGTCTGA 528
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