Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01605 and RBAM_009580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_01605___yhcY.1.9828.seq
# -bsequence dna-align/RBAM_009580___yhcY.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01605___yhcY-RBAM_009580___yhcY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01605___yhcY-RBAM_009580___yhcY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01605___yhcY
# 2: RBAM_009580___yhcY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1197
# Identity: 788/1197 (65.8%)
# Similarity: 788/1197 (65.8%)
# Gaps: 111/1197 ( 9.3%)
# Score: 2400.0
#
#
#=======================================
BSNT_01605___ 1 GTGAGCAAAATGA-------GGATGGAAAAATTAAAAACGCTGAAAACGA 43
.|||..||||.|| || |.||||..|||||||||.|.|||.|||
RBAM_009580__ 1 TTGACGAAAACGACAACGACGG-TAGAAACGTTAAAAACGTTAAAAGCGA 49
BSNT_01605___ 44 TTGCCGAAACCTTAAATCAAGGGCACGATATCAAAGCAA-CACTGGATGA 92
||||.|||||||||||.|||.|.|||||| |.||||.|| |.||.|||.|
RBAM_009580__ 50 TTGCGGAAACCTTAAACCAAAGCCACGAT-TTAAAGGAAGCGCTTGATAA 98
BSNT_01605___ 93 GGTTTTAAAAGAGTTGCTGAGTCTGACAAACCTTCAATCCGGATGGATTT 142
.||..|....||..||||.||.|||||....||.||..|.||.|||||||
RBAM_009580__ 99 AGTGCTTCGCGAACTGCTCAGCCTGACCGGGCTGCAGACAGGGTGGATTT 148
BSNT_01605___ 143 TTTTGATCGAAGAAGATGGGTCTTATACGTTAGCGGCCGACGCTTATCTG 192
||.||||.||....||.||.|||||||||.|.||.||...|||||||.|.
RBAM_009580__ 149 TTCTGATTGAGCCGGACGGATCTTATACGCTCGCCGCATCCGCTTATTTA 198
BSNT_01605___ 193 CCCCCGGCTTTAAG-CCGCAAGGAAAAAGTGCTGATGTGCGAAGGGGAGT 241
||.||||||.|..| |.|| .||||||.|..||.||||||...|||||.|
RBAM_009580__ 199 CCGCCGGCTCTCGGTCAGC-GGGAAAATGCACTCATGTGCAGCGGGGAAT 247
BSNT_01605___ 242 GTTACTGCCTGACGAAATTCAATAACGGAGGGCTTAGAAAGGCTGCAAAT 291
|.||.||.|||||.|||||||..||.||.||..|.|.||||||.|.|||.
RBAM_009580__ 248 GCTATTGTCTGACCAAATTCAGCAATGGCGGATTGACAAAGGCCGTAAAC 297
BSNT_01605___ 292 ATCATGAACTGCAAACGCATCGAATCAGCAGAA---------AAC--CTG 330
||.|||||.||.|||||.||.||||..||.||| ||| |.|
RBAM_009580__ 298 ATAATGAATTGTAAACGGATTGAATTCGCGGAACAGACGACGAACTGCCG 347
BSNT_01605___ 331 CATTGTTTTGACACAGAAGGGATTACGCATCATGCAACTGTGCCTTTAGA 380
| ||.|||||.||.|||||.||||||||.||.||.||..|.||
RBAM_009580__ 348 C--------GATACAGAGGGCATTACCCATCATGCGACCGTACCGCTTGA 389
BSNT_01605___ 381 AGACGG-GGACAGAAGATTCGGATTGTTAAATGTGGCGGC-GGCCGGAAA 428
.||||| ||.|.|||| |||||.||.|||||.||.||.|| .|| ||||
RBAM_009580__ 390 GGACGGCGGCCGGAAG-TTCGGTTTATTAAACGTCGCCGCAAGC--GAAA 436
BSNT_01605___ 429 AACCATGTTT-GATGAGGAAGAGCTGCATTTACTCGAATCTGTCGCCTTT 477
|..|||.||| .|.||.|||||.||||||.|.||.|||.|.||.||.|||
RBAM_009580__ 437 AGACATTTTTCAACGAAGAAGAACTGCATCTTCTTGAAGCGGTTGCATTT 486
BSNT_01605___ 478 CAGATCGGAACGGCAATCCAGCGTATGA----GGCTTTCCGAATATCAAC 523
||.|||||||||||.||.|||||.|||| || ||||||.|.|.|
RBAM_009580__ 487 CAAATCGGAACGGCGATTCAGCGGATGAAATTGG----CCGAATTTGAGC 532
BSNT_01605___ 524 AAAAAAATGCTCTTTTAATGGAGCGTAACCGCCTCGCTCAGGAGCTTCAC 573
|..|.||.||.||.||.|||||.||.|.|.|.||.||.||.|||||.||.
RBAM_009580__ 533 AGCAGAACGCCCTGTTGATGGAACGAAGCAGACTTGCGCAAGAGCTGCAT 582
BSNT_01605___ 574 GATTCAGTCAATCAAATGCTGTTTTCCGTCAGTTTAACTGCCAAAGCTGC 623
|||||.||||||||||||||||||||.|||||.|||||.||.|||||.||
RBAM_009580__ 583 GATTCCGTCAATCAAATGCTGTTTTCTGTCAGCTTAACGGCAAAAGCCGC 632
BSNT_01605___ 624 GAAGACACTAACAAAAGATGAGAATT----TACAGCAGATGATTGAATTC 669
.||||...|.|||.|.||||| | |.|.||||||||||...||.
RBAM_009580__ 633 AAAGAGCTTTACAGATGATGA----TCGGCTCCGGCAGATGATTACGTTT 678
BSNT_01605___ 670 ATCCAAAACCTATCACAGGACGCGCTCGCAGAAATGAAAGCGTTAATTTG 719
||.|||.|.||.||.|||||.|||||..|||||||||..|||.|.|||||
RBAM_009580__ 679 ATTCAAGAGCTGTCTCAGGATGCGCTAACAGAAATGAGGGCGCTTATTTG 728
BSNT_01605___ 720 GCAGCTTCGTCCCGGAGGATTGGAAAAAGGGCTGGCTGAAGCCATTAAAA 769
||||||....||.|.|.|.|||...|||||||||..||...|.||.||||
RBAM_009580__ 729 GCAGCTGAAGCCGGAAAGTTTGACGAAAGGGCTGTATGCGTCGATCAAAA 778
BSNT_01605___ 770 GCTATGGTGCGCTCATTGG-ATTGAAGATCATTTTTACACAAAA---AGG 815
||||||..||.||.||.|| .|.|||| .|.|||.| .||| |||
RBAM_009580__ 779 GCTATGCCGCTCTTATCGGCCTGGAAG-CCGTTTGT----GAAATGGAGG 823
BSNT_01605___ 816 CTGTCCT-GTTCTGACTGATGAGCAGGAGCATATGCTATGGCGTGTCGTC 864
.||..|| |..||.||.|||||.|||||.||...|||.|||||..|||.|
RBAM_009580__ 824 ATGAGCTGGAGCTTACAGATGAACAGGAACACGCGCTTTGGCGGATCGCC 873
BSNT_01605___ 865 CAGGAAGCTTTAAATAACTGCAAAAAGCATGCCGGAACGGATACGGCGTA 914
||||||||.||.||||||||.|||||||||||.|||||||| .|||..||
RBAM_009580__ 874 CAGGAAGCCTTGAATAACTGTAAAAAGCATGCGGGAACGGA-CCGGGTTA 922
BSNT_01605___ 915 TGTT--------------AGTCTGACTGCTTCTTTGTGCCATGCGGAGCT 950
|..| ||.|.||.||| ||.|||||
RBAM_009580__ 923 TCATTTCCGCCGTCAAAAAGCCGGATTGC-------------GCAGAGCT 959
BSNT_01605___ 951 GGATATCATCGATCATGGGGCGGGATTTCGCTATGAAGCGCATGCCGGTC 1000
..||||.|.|||.|.|||.|||||.||..||..|||.||.|||||.|..|
RBAM_009580__ 960 TCATATTAGCGACCGTGGAGCGGGCTTCAGCGCTGATGCACATGCTGTGC 1009
BSNT_01605___ 1001 TGCCTTCACTTGGCATCAAGGGTATGAAAGAACGGGCGGAAAAAGCCGGC 1050
|.||.||.||.|||.|....||.|||||||..|||||.|||..|..||||
RBAM_009580__ 1010 TCCCATCGCTCGGCGTGGCCGGCATGAAAGCGCGGGCTGAAGCAATCGGC 1059
BSNT_01605___ 1051 G--CTAAGTTTTGGATTG-AGTCAGCGCTTGGAACTGGAACAAAGCTGTC 1097
| | |.|||..|.|| |.||.|..|||||..|.|||||.|...|.||
RBAM_009580__ 1060 GGCC---GCTTTACACTGCAATCCGATCTTGGCGCCGGAACGATTGTCTC 1106
BSNT_01605___ 1098 CATCAGGCTTCCGCTAACAAGCCGAAAAGGAGGGGCGGTATGA---- 1140
|.|..||||||||.| .|| |||..||.|||.|||
RBAM_009580__ 1107 CGTTCGGCTTCCGTT------TCG----GGACAGGAGGTCTGATTGA 1143
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