Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01599 and RBAM_009540

See Amino acid alignment / Visit BSNT_01599 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:15
# Commandline: needle
#    -asequence dna-align/BSNT_01599___glpF.1.9828.seq
#    -bsequence dna-align/RBAM_009540___glpF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01599___glpF-RBAM_009540___glpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01599___glpF-RBAM_009540___glpF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01599___glpF
# 2: RBAM_009540___glpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 833
# Identity:     660/833 (79.2%)
# Similarity:   660/833 (79.2%)
# Gaps:          10/833 ( 1.2%)
# Score: 2597.0
# 
#
#=======================================

BSNT_01599___      1 ---ATGACAGCATTTTGGGGAGAAGTCATCGGTACGATGCTGCTTATCAT     47
                        |||||||||||||||||||||||.||||||||.|||||||||.|.||
RBAM_009540__      1 ATGATGACAGCATTTTGGGGAGAAGTAATCGGTACAATGCTGCTTGTTAT     50

BSNT_01599___     48 TTTTGGTGCAGGTGTTTGTGCAGGTGTCAATTTAAAGAAATCGCTTTCAT     97
                     |||.||.|..||.||||||||.||.|||||||||||||||||||||||||
RBAM_009540__     51 TTTCGGAGGCGGCGTTTGTGCGGGAGTCAATTTAAAGAAATCGCTTTCAT    100

BSNT_01599___     98 TCCAGTCTGGCTGGATTGTTGTTGTATTTGGATGGGGATTGGGTGTTGCC    147
                     .|||.||.||.|||||||||.|||||||.||.|||||||||||.||.|||
RBAM_009540__    101 ACCAATCCGGATGGATTGTTATTGTATTCGGCTGGGGATTGGGAGTAGCC    150

BSNT_01599___    148 ATGGCGGCATACGCGGTTGGCGGCATCAGCGGTGCCCATTTGAATCCGGC    197
                     |||||||||||.||.||.|||.||||||||||.|||||.|||||||||||
RBAM_009540__    151 ATGGCGGCATATGCCGTCGGCAGCATCAGCGGCGCCCACTTGAATCCGGC    200

BSNT_01599___    198 GCTAACGATAGCGCTTGCATTTGTAGG-AGATTTTCCTTGGAAAGAGGTT    246
                     ..|||||||||..|||||..|||.||| || .||||||||||||||||||
RBAM_009540__    201 TTTAACGATAGGCCTTGCGCTTGAAGGCAG-CTTTCCTTGGAAAGAGGTT    249

BSNT_01599___    247 CCGGTTTATATTGCGGCGCAAATGATCGGAGCGATCATCGGTGCGGTGAT    296
                     ||.|||||||||||||..||.|||||||||||.||.|||||||||||..|
RBAM_009540__    250 CCTGTTTATATTGCGGGACAGATGATCGGAGCAATGATCGGTGCGGTTGT    299

BSNT_01599___    297 TATTTATCTGCATTACCTCCCGCACTGGAAGTCAACGGATGATCCCGCTG    346
                     |.|.|..||.|||||.||.|||||.||||||.|.|||||||||||.||.|
RBAM_009540__    300 TGTGTTCCTTCATTATCTGCCGCATTGGAAGGCGACGGATGATCCGGCCG    349

BSNT_01599___    347 CCAAGCTGGGTGTTTTCTCAACAGGGCCCAGCATTCCGCATACATTTGCA    396
                     |.||.|||||.||||||||.||.||.||.||.|||||.||||||||||..
RBAM_009540__    350 CTAAACTGGGCGTTTTCTCGACCGGCCCGAGTATTCCTCATACATTTGGG    399

BSNT_01599___    397 AACGTTTTAAGCGAAGTGATTGGGACATTTGTCCTTGTACTTGGAATCTT    446
                     ||..|..||||.|||||.|||||.||.|||||.|||||.||.||.||.||
RBAM_009540__    400 AATATGATAAGTGAAGTCATTGGTACGTTTGTGCTTGTGCTCGGCATTTT    449

BSNT_01599___    447 GGCCATTGGGGCAAATCAATTTACAGAAGGACTTAATCCTTTAATCGTCG    496
                     |||.||.||.||.|||.||||||||.||||.||.||.||..|.||.||||
RBAM_009540__    450 GGCAATCGGAGCGAATGAATTTACAAAAGGGCTGAACCCGCTGATTGTCG    499

BSNT_01599___    497 GTTTCCTCATTGTAGCAATCGGTATTTCTCTGGGAGGCACCACCGGCTAT    546
                     |.||||||||.||.||.|||||.||||||||.|||||.||.|||||.|||
RBAM_009540__    500 GATTCCTCATCGTTGCCATCGGGATTTCTCTTGGAGGGACGACCGGATAT    549

BSNT_01599___    547 GCTATCAATCCTGCACGTGACTTAGGTCCGCGGATAGCCCACGCTTTTCT    596
                     ||.|||||.|||||.||.||.||.||.|||.|.||.||.|||||.|||||
RBAM_009540__    550 GCGATCAACCCTGCGCGGGATTTGGGGCCGAGAATCGCTCACGCCTTTCT    599

BSNT_01599___    597 TCCAATTCCG-GGGAAGGGCTCATCAAACTGGAAATACGCATGGGTTCCG    645
                     .||.|||||| ...|||||| |.||.||.||||||||.||.|||.||||.
RBAM_009540__    600 GCCGATTCCGAAAAAAGGGC-CGTCCAATTGGAAATATGCCTGGATTCCC    648

BSNT_01599___    646 GTAGTCGGCCCGATTTTAGGCGGATCATTCGGCGGTGTATTTTACAACGC    695
                     |||||.||.|||||..|.|||||..|.||||||||.|||||||||||.||
RBAM_009540__    649 GTAGTTGGTCCGATCATGGGCGGTGCGTTCGGCGGCGTATTTTACAATGC    698

BSNT_01599___    696 TGCATTTAAAGGGCACATCACAAGCAGCTTCTGGATTGTAAGCGTTATAT    745
                     .||.||||||||..|..|.|||...|||||.|||.||||||||||||||.
RBAM_009540__    699 CGCGTTTAAAGGAAATGTGACACCTAGCTTTTGGTTTGTAAGCGTTATAA    748

BSNT_01599___    746 TGGTTGTGGTATTGTTAGGACTCTATGTTTATAC---GAAATCATATTCT    792
                     |||||||.||..|.||...|||||||.|||||||   ||||||..|.||.
RBAM_009540__    749 TGGTTGTAGTGCTTTTCATACTCTATATTTATACCAAGAAATCTCAATCA    798

BSNT_01599___    793 GCTAAAACATTATCAAATTCTAAATATATTTAA    825
                     ...||||||||||||||||||.|||||||||||
RBAM_009540__    799 CAGAAAACATTATCAAATTCTGAATATATTTAA    831


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01599 and RBAM_009540

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
