Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01597 and RBAM_009520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:15
# Commandline: needle
# -asequence dna-align/BSNT_01597___yhxA.1.9828.seq
# -bsequence dna-align/RBAM_009520___yhxA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01597___yhxA-RBAM_009520___yhxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01597___yhxA-RBAM_009520___yhxA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01597___yhxA
# 2: RBAM_009520___yhxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1368
# Identity: 1010/1368 (73.8%)
# Similarity: 1010/1368 (73.8%)
# Gaps: 54/1368 ( 3.9%)
# Score: 3688.0
#
#
#=======================================
BSNT_01597___ 1 ATGGAAAACATTCAGCAAAATCAGGGATTAAAGCAAAAAGAT---GAGCA 47
.|||||.|..|.||..||||||||..|.|.||.|||||.||| ||||
RBAM_009520__ 1 GTGGAACATGTACAAAAAAATCAGTCACTCAAACAAAAGGATAAAGAGC- 49
BSNT_01597___ 48 ATTTG-TGTGGCATGCCATGAAGGGAGCGCATCAAGCGGACAGCCTGATA 96
|| |.|||||.||.|||||.||.|||.|.|..|..||||||.|.||.
RBAM_009520__ 50 ---TGATTTGGCACGCGATGAAAGGGGCGGAGCCGGATGACAGCATAATC 96
BSNT_01597___ 97 GCCCAGAAGGCCGAGGGGGCCTGGGTAACCGACATAGACGGACGCCGCTA 146
|.|||.||.|..||.||.||||||||.||.|||||.|||||..|.||.||
RBAM_009520__ 97 GTCCAAAAAGGGGAAGGCGCCTGGGTTACGGACATTGACGGCAGACGGTA 146
BSNT_01597___ 147 TTTGGATGCGATGTCCGGTTTGTGGTGCGTCAACATTGGTTACGGCAGAA 196
||||||.|..|||||.||..|||||||||||||.||.||.||.||.||||
RBAM_009520__ 147 TTTGGACGGCATGTCAGGCCTGTGGTGCGTCAATATCGGATATGGGAGAA 196
BSNT_01597___ 197 AGGAGCTTGCGGAGGCTGCCTATGAG-CAACTAAAGGAGCTGCCTTACTA 245
||||.|||||.||.||.||.|| .|| |||.|.||||||||.|||||.||
RBAM_009520__ 197 AGGAACTTGCCGATGCGGCTTA-CAGCCAATTGAAGGAGCTTCCTTATTA 245
BSNT_01597___ 246 CCCGTTAACGCAAAGTCACGCACCCGCAATTCAACTGGCGGAAAAGCTGA 295
.|||.|.||.|||||.||...|||.||.|||.|..|.||.|||||..|||
RBAM_009520__ 246 TCCGCTGACCCAAAGCCATCAACCTGCGATTGAGGTTGCAGAAAAATTGA 295
BSNT_01597___ 296 ATGAATGGCTTGGCGGCGATTATGTTATCTTTTTTTCCAACAGCGGATCG 345
||||||||||.||||||||||||||.|||||.||||||||||||||||||
RBAM_009520__ 296 ATGAATGGCTCGGCGGCGATTATGTAATCTTCTTTTCCAACAGCGGATCG 345
BSNT_01597___ 346 GAAGCAAACGAAACTGCTTTTAAAATTGCCCGCCAGTACCATCTGCAAAA 395
||||||||.|||||.||.||.||||||||||||||.|||||..|..||||
RBAM_009520__ 346 GAAGCAAATGAAACCGCGTTCAAAATTGCCCGCCAATACCACATTGAAAA 395
BSNT_01597___ 396 CGGCGACCACAGCCGTTATAAATTCATCTCAAGATATCG-GGCATACCAC 444
||||||.||||||||.|..|||||||||||..|.||..| ||| ||.|||
RBAM_009520__ 396 CGGCGATCACAGCCGCTTCAAATTCATCTCCCGGTACAGAGGC-TATCAC 444
BSNT_01597___ 445 GGCAATACATTGGGAGCGCTCTCAGCTACCGGACAGGCGCAGCGGAAATA 494
||||||||..||||.||||||.|.||||||||.|||||||||.|.||.||
RBAM_009520__ 445 GGCAATACGATGGGGGCGCTCGCCGCTACCGGCCAGGCGCAGAGAAAGTA 494
BSNT_01597___ 495 TAAATACGAGCCTTTGAGC-----CAAGGGTTCCTGCATGCAGCTCCGCC 539
||||||.||||| || |||||.||..||||.||.||.|||||
RBAM_009520__ 495 TAAATATGAGCC-----GCTCTCACAAGGTTTTTTGCACGCGGCGCCGCC 539
BSNT_01597___ 540 AGATATATACCGGAATCCTGATGATGCAGACACGCTTGAAAGCGCAAATG 589
.|||.|.||.||||||||.|..|||||.|.|||..|.||||||||..|||
RBAM_009520__ 540 TGATCTTTATCGGAATCCCGGCGATGCCGTCACATTGGAAAGCGCGCATG 589
BSNT_01597___ 590 AAATCGACCGCATCATGACATGGGAATTAAGCGAAACGATTGCCGGGGTC 639
|.||||||||.||||||||.|||||.||||||||||||||||||||.||.
RBAM_009520__ 590 ACATCGACCGGATCATGACGTGGGAGTTAAGCGAAACGATTGCCGGCGTT 639
BSNT_01597___ 640 ATTATGGAGCCCATCATTACAGGCGGAGGCATCCTAATGCCGCCGGACGG 689
||||||||.||.||.||||||||||||||.||.||.|||||.||||||||
RBAM_009520__ 640 ATTATGGAACCGATTATTACAGGCGGAGGGATACTGATGCCCCCGGACGG 689
BSNT_01597___ 690 ATATATGAAAAAGGTGGAGGACATTTGCCGGCGCCACGGAGCCCTTTTGA 739
.||||||..||||||.||||||||||||||.||||||||.||.|||.|||
RBAM_009520__ 690 GTATATGGCAAAGGTAGAGGACATTTGCCGCCGCCACGGCGCGCTTCTGA 739
BSNT_01597___ 740 TTTGCGATGAAGTGATCTGCGGGTTTGGACGGACAGGCGAGCCGTTCGGG 789
|..|.||||||||.||.|||||.||.||.||.||.||.|||||||||||.
RBAM_009520__ 740 TCAGTGATGAAGTCATTTGCGGTTTCGGCCGCACGGGAGAGCCGTTCGGA 789
BSNT_01597___ 790 TTTATGCACTACGGTGTGAAGCCTGATATCATTACGATGGCAAAGGGAAT 839
|||..|||.|||||.||....||.||.|||.|.||.||||||||.||.||
RBAM_009520__ 790 TTTCAGCATTACGGCGTTTCACCGGACATCGTCACAATGGCAAAAGGCAT 839
BSNT_01597___ 840 CACAAGCGCGTATCTGCCATTGTCAGCGACTGCTATTAAACGGGACATTT 889
.||.|||||.||||||||..||||.||.||.||..|.||||||||.||||
RBAM_009520__ 840 TACGAGCGCTTATCTGCCGCTGTCGGCAACGGCAGTAAAACGGGAGATTT 889
BSNT_01597___ 890 TCGAAGCGTATCAGGGGGAAGCTCCTTATGACCGTTTCCGCCACGTGAAC 939
|.||.||||||..|||.|..|..||.||.|.|||.|||||.||||||||.
RBAM_009520__ 890 TTGAGGCGTATTCGGGCGGTGAGCCGTACGGCCGCTTCCGGCACGTGAAT 939
BSNT_01597___ 940 ACGTTCGGCGGAAGCCCGGCTGCCTGTGCCTTGGCGTTGAAAAACCTGCA 989
||.|||||.||.|..|||||.|||||.|||.||||.||||||||||||||
RBAM_009520__ 940 ACATTCGGAGGCAATCCGGCAGCCTGCGCCCTGGCCTTGAAAAACCTGCA 989
BSNT_01597___ 990 AATTATGGAGGACGAACTGCTGATTCAGCGATCCCGCGATCTTGGAGCAA 1039
|.|.||||||||||||...|||||....||.|||||.||.|||||||.||
RBAM_009520__ 990 ATTGATGGAGGACGAAAATCTGATCGCCCGTTCCCGGGAGCTTGGAGAAA 1039
BSNT_01597___ 1040 AGCTTTTAGGTGAGCT----CCAAGCTCTGAGAGAACACCCGGCAGTCGG 1085
.|||..|..||||||| || |||| ||||||||.|||||.|||||
RBAM_009520__ 1040 GGCTGCTCCGTGAGCTTGAGCC--GCTC--AGAGAACATCCGGCGGTCGG 1085
BSNT_01597___ 1086 GGATGTTAGAGGAAAAGGGCTGCTGATCGGAATCGAACTCGTCAAAGATA 1135
.|||||..|.||.||.||.||.||...|||.||.||.||||||||.||.|
RBAM_009520__ 1086 AGATGTACGGGGCAAGGGCCTTCTTGCCGGCATTGAGCTCGTCAAGGACA 1135
BSNT_01597___ 1136 AATTGACTAAAGAGCCGGCTGATGCCGCCAAAGTAAACCAAGTGGTTGCG 1185
||.|.||.||.||.||.||||||||||||...||..|.||.||..|..|.
RBAM_009520__ 1136 AAATCACGAAGGAACCCGCTGATGCCGCCCTTGTGCAGCACGTCATCACC 1185
BSNT_01597___ 1186 GCGTGCAAAGAAAAAGGGCTGATCATCGGCAAAAACGGCGATACAGTCGC 1235
|||||||.|||||||||.|||.|..||||.|||||.||||||||.||.||
RBAM_009520__ 1186 GCGTGCAGAGAAAAAGGCCTGCTTGTCGGGAAAAATGGCGATACTGTAGC 1235
BSNT_01597___ 1236 CGGCTACAACAACGTCATCCAGCTTGCGCCGCCATTTTGCCTGACAGAAG 1285
.||.||.||.||.|||||.|||||..|.|||||.|||||||||.|.||.|
RBAM_009520__ 1236 GGGATATAATAATGTCATTCAGCTGTCTCCGCCTTTTTGCCTGTCGGACG 1285
BSNT_01597___ 1286 AGGACCTTTCCTTTATCGTGAAAACGGTGAAAGAAAGC------------ 1323
||||.||.||.||.|||.|....||.||.||.||||||
RBAM_009520__ 1286 AGGAGCTCTCTTTCATCATTTCGACCGTAAAGGAAAGCGTGCTGAGCATT 1335
BSNT_01597___ 1324 ---TTTCAAACGATATAA 1338
|||.||
RBAM_009520__ 1336 GATTTTTAA--------- 1344
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