Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01592 and RBAM_009500
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:15
# Commandline: needle
# -asequence dna-align/BSNT_01592___yhcW.1.9828.seq
# -bsequence dna-align/RBAM_009500___yhcW.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01592___yhcW-RBAM_009500___yhcW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01592___yhcW-RBAM_009500___yhcW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01592___yhcW
# 2: RBAM_009500___yhcW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 699
# Identity: 506/699 (72.4%)
# Similarity: 506/699 (72.4%)
# Gaps: 45/699 ( 6.4%)
# Score: 1843.5
#
#
#=======================================
BSNT_01592___ 1 GTGATTAAAGCGTTAATTTTTGATTTTGACGGGCTTATTCTAGATACAGA 50
.||||.|||||.|||||.|||||||||||||||.|.|||.||||||||||
RBAM_009500__ 1 TTGATAAAAGCATTAATCTTTGATTTTGACGGGTTAATTTTAGATACAGA 50
BSNT_01592___ 51 AACACACGAATATGAGGTTCTTCAGGAAATATTTGAAGAGCACGGCTCAG 100
|||.||.||||||||.||.||.||||||||.||||||||.|||||.|||.
RBAM_009500__ 51 AACCCATGAATATGAAGTGCTGCAGGAAATGTTTGAAGAACACGGTTCAA 100
BSNT_01592___ 101 TGCTGCCGCTATCTGTCTGGGGAAAGGTCATCGGAACTGCTGCGGGTTTC 150
...||||..||||.||||||||||||||.||||||||.||.|||||.||.
RBAM_009500__ 101 CATTGCCTTTATCCGTCTGGGGAAAGGTGATCGGAACGGCCGCGGGGTTT 150
BSNT_01592___ 151 CGGCCTTTTGAATATTTAGAAGAGCAGATCGGGAA-AAAGCTGAACCATG 199
..|||.||.|.|||||||||.||||||.| ||||| ||||||..|.||||
RBAM_009500__ 151 AAGCCGTTCGCATATTTAGAGGAGCAGCT-GGGAAGAAAGCTCGATCATG 199
BSNT_01592___ 200 AAGAGCTCAC-ACAATTGAGAAGAGAGCGGTTCGCCAAACGCATGGAAAC 248
|.||.||.|| .|.| |.||..|.|.|||.||||...|.||.|||.|.||
RBAM_009500__ 200 ATGAACTGACGGCGA-TCAGGCGCGGGCGCTTCGAACAGCGGATGAAGAC 248
BSNT_01592___ 249 AGAAAAAGCGAGACCTGGTGTCGAAGCGTATTTGAATGCGGCAAAGGATT 298
.||||..|||.|.||.||.||.||.||.|||||....||||||||.||.|
RBAM_009500__ 249 GGAAACGGCGCGTCCCGGGGTGGAGGCTTATTTAGCCGCGGCAAAAGAAT 298
BSNT_01592___ 299 TAGGCTTAAAAATAGGCCTTGCTTCCAGCTCTGATTATAAATGGGTGTCC 348
||||.||.|||.|.||.||.||.||||||||.||||.|||||||||.||.
RBAM_009500__ 299 TAGGATTGAAAGTGGGGCTCGCGTCCAGCTCAGATTTTAAATGGGTATCG 348
BSNT_01592___ 349 GGCCATTTGAAGCAAATCGGCCTGTTTGATGATTTTGAAGTTATTCAAAC 398
||||||.|||||.||.|.||||||||||||||.||||||||.|||||.||
RBAM_009500__ 349 GGCCATCTGAAGGAATTAGGCCTGTTTGATGAATTTGAAGTGATTCAGAC 398
BSNT_01592___ 399 GGCTGATGATGTGGAAGAGGTGAAGCCGAATCCTGAGCTCTATTTATTGG 448
||||||.||.||.|||||.||||||||||||||.|||||||||.|....|
RBAM_009500__ 399 GGCTGACGACGTAGAAGAAGTGAAGCCGAATCCGGAGCTCTATCTGAAAG 448
BSNT_01592___ 449 CGGCAAAGAAC--CTCGGGGTATCGCCAGCGGAATGTCTCGCGTTTGAGG 496
|.|| .|||| .|.||.||....|||.|.||||||||.||.|||||||
RBAM_009500__ 449 CTGC--GGAACATTTAGGCGTTGAACCATCTGAATGTCTGGCCTTTGAGG 496
BSNT_01592___ 497 ATTCTGTCAATGGTTCGATTGCTGCGAAACGTGCAGGAATGAAGTGTGTC 546
||||.|||||.||.||.||.||.||.|||||.||.||.|||||.||||||
RBAM_009500__ 497 ATTCGGTCAACGGCTCAATCGCAGCCAAACGGGCCGGCATGAAATGTGTC 546
BSNT_01592___ 547 ATTGTCCCGAATAAAGTAACGGGCACCTTGATGTTTGAAGACTATGATCA 596
||.|||||||||||.|||||..||.||.||.|.||||||||.||.|||||
RBAM_009500__ 547 ATCGTCCCGAATAAGGTAACAAGCGCCCTGTTATTTGAAGAGTACGATCA 596
BSNT_01592___ 597 CAGGCTTGAATCAATGGCGGAAATGGAGCTCGCCCTATTGCTT-----GA 641
|||.||.|||||.|||||.||||||||.||.|...||.| ||| ||
RBAM_009500__ 597 CAGACTGGAATCGATGGCTGAAATGGAACTTGAATTACT-CTTACAGCGA 645
BSNT_01592___ 642 TCATCTGAACTCACAAAACTAG--------------------------- 663
| |||||...||||||.|.
RBAM_009500__ 646 T----TGAACGATCAAAACGAACCGGCAGGGGGAAGCAGCATTGTCTGA 690
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