Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01587 and RBAM_009470

See Amino acid alignment / Visit BSNT_01587 in genome browser / Return to Orthologue table 
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:14
# Commandline: needle
#    -asequence dna-align/BSNT_01587___yhcT.1.9828.seq
#    -bsequence dna-align/RBAM_009470___yhcT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01587___yhcT-RBAM_009470___yhcT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01587___yhcT-RBAM_009470___yhcT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01587___yhcT
# 2: RBAM_009470___yhcT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 954
# Identity:     649/954 (68.0%)
# Similarity:   649/954 (68.0%)
# Gaps:          90/954 ( 9.4%)
# Score: 2064.5
# 
#
#=======================================

BSNT_01587___      1 ATGAACCAAAAAGGCAGAGGGCTTGAGATCCTCATCAATGAAAAACAGGA     50
                     |||||.|||||.|.|.|.||.||.||..|.||.||.|..|||||.||.|.
RBAM_009470__      1 ATGAAACAAAATGACCGCGGTCTGGAACTTCTGATTACGGAAAAGCACGC     50

BSNT_01587___     51 CGGCCAATGGCTGTTTTCCGTACTCAAAACAGCGCTCAAAGCTTCTAAAC    100
                     |||.||||||||||||||.||.||.|||.|.|...||.|.||.||.||||
RBAM_009470__     51 CGGACAATGGCTGTTTTCAGTCCTGAAATCTGAATTCCAGGCGTCAAAAC    100

BSNT_01587___    101 CAGTGA-TACAAGACTGGATGTCCCATCAACAG-ATAAAGGTCAAT----    144
                     |.||.| ||| .||.||||||..|||..|| || ||..||||.|||    
RBAM_009470__    101 CCGTAATTAC-GGAATGGATGAACCAAGAA-AGCATTCAGGTGAATCGAA    148

BSNT_01587___    145 ----CACGAATCCGTCTTAAACAATATGATTGTAAAAAAGGGAGACCGCG    190
                         ||||||        ||||||.||.||..|.||||..|||||.|||.
RBAM_009470__    149 CACCCACGAA--------AAACAACATCATACTGAAAACCGGAGATCGCT    190

BSNT_01587___    191 TGTTCATTGATCTTCAGGAAAGTGAA---GCATCTTCGGTCATTCCGGAG    237
                     |.|||||||||||||||||||   ||   |..||||||||.|.||||||.
RBAM_009470__    191 TATTCATTGATCTTCAGGAAA---AAACGGGTTCTTCGGTGACTCCGGAA    237

BSNT_01587___    238 TATGGCGAGCTTGATATTTTATTTGAGGACAATCATATGCTCAT--CATC    285
                     ||.||.||||..||.||||||||||||||||||||||||||.||  ||  
RBAM_009470__    238 TACGGAGAGCCGGACATTTTATTTGAGGACAATCATATGCTGATTGCA--    285

BSNT_01587___    286 AATAAACCCGCTGGCATCGCGACGCATCCGAATGAGGATGGGCAAACCGG    335
                     |||||.||.||.||.||..||||.|||||.|||||.||.||.||.|||||
RBAM_009470__    286 AATAAGCCGGCGGGAATGCCGACTCATCCAAATGAAGAGGGTCAGACCGG    335

BSNT_01587___    336 CACACT-GGCTAATTTGATCGCGTATCATTATCAGATAAATGGCGAAACA    384
                     |||.|| .|| ||..|||||||.||.||||.|||.||.||.|||| |.||
RBAM_009470__    336 CACCCTCAGC-AACCTGATCGCTTACCATTTTCATATCAACGGCG-AGCA    383

BSNT_01587___    385 TG-TAAGGTGCGCCACGTCCATCGTCTTGATCAGGATACATCTGGCGCTA    433
                     .| .||.|||||||||||.||.||||||||.|..||.||.||.|||||..
RBAM_009470__    384 GGCGAAAGTGCGCCACGTTCACCGTCTTGACCGTGACACGTCAGGCGCGG    433

BSNT_01587___    434 TCGTTTTTGCCAAGCATCGTTTGGCACACGCCATCTTAGACCAGCAGTTA    483
                     |||||||.||.||.||.||..||||.||.||.|||.|.||||..|||.|.
RBAM_009470__    434 TCGTTTTCGCGAAACACCGCCTGGCCCATGCAATCCTTGACCGTCAGCTC    483

BSNT_01587___    484 GAGAAAAAGACGCTGAAGCGTACGTATACCGCCATCGCTGAAGGTAAGCT    533
                     ||.|..||.||..|.||.||.||.||||.||||...||.|||||.||   
RBAM_009470__    484 GAAACCAAAACATTAAAACGCACCTATATCGCCGCGGCGGAAGGAAA---    530

BSNT_01587___    534 ACGGACG---AAAAAAGGGACAATTAATTCACCGATCGGCAGAGACCGCT    580
                     |..||||   ||||||||.||..||.|.||.|||||||||.|.|||.|.|
RBAM_009470__    531 AGTGACGCCTAAAAAAGGCACGGTTGACTCGCCGATCGGCCGCGACAGGT    580

BSNT_01587___    581 CACA-CCCGACAAGACGCCGGGTTTCACCAGGCGGGCAAACAGCCGTCAC    629
                     |||| .|||.| |||||.||.||.|||||.|||||.|||.|.||||||||
RBAM_009470__    581 CACATTCCGTC-AGACGGCGCGTCTCACCCGGCGGACAAGCCGCCGTCAC    629

BSNT_01587___    630 TCATTTCAAGGTAATGGCCAGCAATGCGAAAGA--------ACGGCTGTC    671
                     .||||.|||.||               ||||||        .||| || |
RBAM_009470__    630 CCATTACAAAGT---------------GAAAGACTATCATCCCGG-TG-C    662

BSNT_01587___    672 GCTCGTTGAATT---AGAG------CTGGAAACAGGCAGAACACACCAAA    712
                     ||...||..|||   ||||      ||||||||.||.||||||||.||||
RBAM_009470__    663 GCAGCTTACATTGGCAGAGCTTGAACTGGAAACCGGGAGAACACATCAAA    712

BSNT_01587___    713 TCCGTGTTCATCTGGCGAGCCTCGGCCATCCGTTGACAGGAGACTCGCTT    762
                     ||.|.||||||.||||.|||.||||||||||||||.|.||.||....||.
RBAM_009470__    713 TCAGGGTTCATATGGCAAGCATCGGCCATCCGTTGGCGGGCGATGACCTG    762

BSNT_01587___    763 TACGGAGGCGGGAGCAAGCTGCTAAACAGGCAGGCACTGCACGCCAATAA    812
                     |||||.||..|.||.|.||||.|..||||||||||.||.|||||.||.||
RBAM_009470__    763 TACGGCGGAAGCAGGACGCTGTTTCACAGGCAGGCGCTTCACGCAAAAAA    812

BSNT_01587___    813 AGTACAAGCG--GTTCACCCGATAACAGACGAGCTCATAGTTGCTGAAGC    860
                     |||  .||.|  ||.||.|||||..|||..||....||.|||||.||.||
RBAM_009470__    813 AGT--CAGTGTCGTCCATCCGATCTCAGGAGAAGAAATCGTTGCCGAGGC    860

BSNT_01587___    861 CCCTTTCCCTGCTGATATG----AAAAACCTTTGCCG-CACATATTTTTC    905
                     .||..|.||.||||||.||    |     .|||.||| .||.||||||||
RBAM_009470__    861 GCCGATGCCGGCTGATCTGGCTCA-----TTTTACCGAAACGTATTTTTC    905

BSNT_01587___    906 ATGA    909
                     .|.|
RBAM_009470__    906 TTAA    909


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