Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01583 and RBAM_009430
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:14
# Commandline: needle
# -asequence dna-align/BSNT_01583.1.9828.seq
# -bsequence dna-align/RBAM_009430___yhcP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01583-RBAM_009430___yhcP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01583-RBAM_009430___yhcP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01583
# 2: RBAM_009430___yhcP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1049
# Identity: 631/1049 (60.2%)
# Similarity: 631/1049 (60.2%)
# Gaps: 193/1049 (18.4%)
# Score: 1971.5
#
#
#=======================================
BSNT_01583 1 TTGCGGGATGGCATAGGAAAGCGTGCGGCATCCGCTCTATTCCTGTGCGG 50
|||| ||||| ||.||||.||.|.||||..||||||||||
RBAM_009430__ 1 -------ATGG----GGAAA-CGGGCGGTATTCACTCTGATCCTGTGCGG 38
BSNT_01583 51 AGTCCTTGTGATGCTGGCTGTAAGCTCAGCCATCGTATC---AAGCGCGA 97
|||||||||.||..|||||||.||.||||| |||.|| |||...||
RBAM_009430__ 39 AGTCCTTGTCATATTGGCTGTCAGTTCAGC---CGTTTCAGTAAGTATGA 85
BSNT_01583 98 TGTATATCCTGTCTTTTCCAGGTCA-------GGCATCTG----GAATAA 136
||||.||||||| ||||.|| .|| |||| | |
RBAM_009430__ 86 TGTACATCCTGT------CAGGCCAAAACAGCCGC-TCTGTTCCG----A 124
BSNT_01583 137 CAAAAGAACAAGTGAC-GAAGCACATGAAGAAAGAGTCATT--CAAACAG 183
|.||.||||||||||| ||| ||||||.|.||||| .||| ||||||.
RBAM_009430__ 125 CGAAGGAACAAGTGACTGAA-CACATGGATAAAGA--AATTTACAAACAT 171
BSNT_01583 184 GCCGATATTTATTACACTTCTAAGGAAAAGTC-CTTACTGCCAT-TGACG 231
.|.|..|||||.||.||..|..|.||||||.| || ||...|| ||||.
RBAM_009430__ 172 ACAGCGATTTACTATACGGCGGATGAAAAGCCGCT--CTTGGATCTGACC 219
BSNT_01583 232 AAAGAAACGCTTGAATATGCAGTCAGTATTAATCAGATTATGATTGGATA 281
||....|||||.||..|.|||....||||.|||||.||.||..|.||.||
RBAM_009430__ 220 AAGCTTACGCTGGACCACGCAAAGCGTATCAATCAAATCATTGTCGGCTA 269
BSNT_01583 282 TTCGAA---TCAAAAGCCTATTGACATTATTTTTTTTCCTAATGAA---- 324
| || |.||..|||..||||..|.|||||.|||.|..|||||
RBAM_009430__ 270 T---AAAGGTGAAGCGCCGCTTGAACTCATTTTCTTTTCGGATGAAGCTG 316
BSNT_01583 325 AAACAGATGGAGGCTTACTCCGGTTTATTG---GATGTAGTTGGTTTTTA 371
|| ||||||...||.||.|| |||| .|||||||.||||||||
RBAM_009430__ 317 AA----ATGGAGCAATATTCAGG---ATTGAAAAATGTAGTCGGTTTTTA 359
BSNT_01583 372 TTCTGAACGGGAGCAGCTGATCGGATTGTTGCCTGAAGAGAAAAAGAAAC 421
|||.||||.|||||||.||||.||..|.|||||||||||||||||..|.|
RBAM_009430__ 360 TTCAGAACAGGAGCAGATGATGGGGCTTTTGCCTGAAGAGAAAAAACAGC 409
BSNT_01583 422 TGTTAGAAGGGGACGAGGTAGCGGTTTATTTGTACCAGAGATTGTTGATT 471
|.||..||...||.|||.|.||.||||...||||..||..||||.|.||.
RBAM_009430__ 410 TTTTGAAAAAAGATGAGCTGGCCGTTTTCATGTATAAGCAATTGATTATA 459
BSNT_01583 472 CATGAATACTCGCACCATGCGTTTCACCAGAAATTGAAGGAGCTTGAGAC 521
||||||||..|.|||.||||||||||.||.|||..|..|.|..|.|.|||
RBAM_009430__ 460 CATGAATATACACACTATGCGTTTCATCAAAAAACGCGGCAATTGGGGAC 509
BSNT_01583 522 GGATCCCGATGAGTTTCCGTTATGGTTTCATGAAGGGTTAAGCGAGTGGA 571
||||.|...||..||||||.|.|||||||||||.|||.|.|||||||||.
RBAM_009430__ 510 GGATACGTCTGTATTTCCGCTTTGGTTTCATGAGGGGCTGAGCGAGTGGG 559
BSNT_01583 572 TTGCGAACTATGAATTGCTCATAGATCCGATCACGTTTTCTGTCGTGCCC 621
|.|||.|.|||||..|..||||.||||||||..|.|||||.||||||||.
RBAM_009430__ 560 TCGCGCATTATGATGTAGTCATTGATCCGATTGCATTTTCCGTCGTGCCG 609
BSNT_01583 622 TTTGACCGTTTGCAGACTGATCGAGACTGGCAGGAAGCTAGAGC----CG 667
|||||.|..||...|||.||.|||.|.||||||.||.| || .|
RBAM_009430__ 610 TTTGATCAATTAACGACCGACCGAAAATGGCAGAAATC----GCGTATGG 655
BSNT_01583 668 AATATGACACTGATGTCTATTTGCAAAGCTTTTATATGATCGATGAGCTG 717
|||||||.||.||||||||||||||||||||.||||||||..|.||..|.
RBAM_009430__ 656 AATATGAAACGGATGTCTATTTGCAAAGCTTCTATATGATAAAGGACTTA 705
BSNT_01583 718 ACGGACAAATACGGGAAAGATATTATTTCAGAAATGATTAAGGAAACGGC 767
||.||.|.||.|||..|||..|||||.|.|...||.||.||..||||.||
RBAM_009430__ 706 ACCGAAACATTCGGAGAAGGCATTATCTTAACCATTATCAACAAAACCGC 755
BSNT_01583 768 AAAAAAAGGGGACTTTGAAAAAGGGTTTAAATCAGCAACAAAGGAATGTC 817
..|||.|..|||.|||||||||||.|||.||.|.||.||.||.|||.|.|
RBAM_009430__ 756 CGAAACACAGGATTTTGAAAAAGGCTTTGAAGCGGCTACGAAAGAAAGCC 805
BSNT_01583 818 TTGATCAATTTGAAAAAGATTTTAAGAAAAAATTTGAAAAAAACAGTGCG 867
|..|.|||||||||.|.|||||.|..|||..||.|||||||||.|...||
RBAM_009430__ 806 TGAAACAATTTGAACATGATTTCATAAAAGCATATGAAAAAAAGAAAACG 855
BSNT_01583 868 GCATTGGATAGT-ATCTATCCAATGCC-TTTGTTATTAGTGAAGTCCTTG 915
||||||||.||| |..|.|||||.||| |||.|||.
RBAM_009430__ 856 GCATTGGAGAGTCAGGTTTCCAACGCCGTTTTTTAA-------------- 891
BSNT_01583 916 CTGACCCATTCCGCCATTCCGACTTGTGTCGGAGGCATTTGTCCTTGGGC 965
RBAM_009430__ 891 -------------------------------------------------- 891
BSNT_01583 966 AGGGGCGAATGAATTTCGCAGCTGTTCCATATCCTGCGCATCAAGCTGA 1014
RBAM_009430__ 891 ------------------------------------------------- 891
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