Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01582 and RBAM_009420

See Amino acid alignment / Visit BSNT_01582 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:14
# Commandline: needle
#    -asequence dna-align/BSNT_01582___yhcN.1.9828.seq
#    -bsequence dna-align/RBAM_009420___yhcN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01582___yhcN-RBAM_009420___yhcN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01582___yhcN-RBAM_009420___yhcN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01582___yhcN
# 2: RBAM_009420___yhcN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 597
# Identity:     382/597 (64.0%)
# Similarity:   382/597 (64.0%)
# Gaps:          78/597 (13.1%)
# Score: 1076.0
# 
#
#=======================================

BSNT_01582___      1 ATGCTTGGAAAAAAACAAGTTCTTGCGTCTGTGCTTCTTATCCCTTTGCT     50
                     |||.|   ||||||.||||...||...||||..||||||.|.||..||||
RBAM_009420__      1 ATGAT---AAAAAAGCAAGCAGTTATCTCTGCCCTTCTTCTGCCGATGCT     47

BSNT_01582___     51 TATGA---CTGGCTGCGGTGTGGCCGACCAAGGTGAGGGCAGACGTGATA     97
                     .||.|   |.||.|||.||.|||...|||||||.||.||.|.|||..||.
RBAM_009420__     48 GATTACCGCAGGGTGCAGTATGGGGAACCAAGGAGAAGGAAAACGAAATG     97

BSNT_01582___     98 ATAATGATGTA---AGAAATGTAAACTATCGAAATCCGGCCAATGACGAT    144
                     |.||..|  .|   || ||||||||.||.||.||..||.|.||.||||  
RBAM_009420__     98 ACAACCA--CACCCAG-AATGTAAATTACCGCAACACGCCTAACGACG--    142

BSNT_01582___    145 ATGCGCAATGTAAACAACCGGGATAATGTTGACAACAATGTTACTGATAA    194
                     .||||        ||||     |||    |||..|||.||        ||
RBAM_009420__    143 GTGCG--------ACAA-----ATA----TGAATACAGTG--------AA    167

BSNT_01582___    195 -TGTCAATAACAATAACA---ATCGTGTA-AATGACGATAATAACAACGA    239
                      .||| |||||.|.||||   |||    | ||||||.||           
RBAM_009420__    168 CCGTC-ATAACCAAAACACCGATC----ACAATGACAAT-----------    201

BSNT_01582___    240 CCGGAAACTCGAG-GTTGCTGATGAAGCAGCTGATAAAGTAACAGACCTA    288
                      ||.||.|| ||| ||.||||||.||||.|||||.||.||.||.||..||
RBAM_009420__    202 -CGTAACCT-GAGAGTGGCTGATAAAGCCGCTGACAAGGTGACTGATTTA    249

BSNT_01582___    289 AAAGAAGTAAAACATGCCGA-TGTCATTGTTGCTGGAAATCA-AGCTTAC    336
                     ||||||||.|||.||| ||| |||.||.|||||.||||| || .|||||.
RBAM_009420__    250 AAAGAAGTTAAAAATG-CGACTGTGATCGTTGCCGGAAA-CAGCGCTTAT    297

BSNT_01582___    337 GTTGCAGTCGTTTTAACTAATGGAAATAAAGGTGCAGTAGAAGACAATTT    386
                     ||.||.||.|||.|.||.||.|||.|.|||||.||..|.|...||.||||
RBAM_009420__    298 GTAGCCGTTGTTCTGACAAACGGACAAAAAGGCGCCATCGCCAACCATTT    347

BSNT_01582___    387 GAAGAAAAAAATAGCCAAAAAGGTAAGATCTACTGACAAAAACATTGAT-    435
                     .||.||.||.||..||.|.|||||.|.|||..|.|  |.||||||  .| 
RBAM_009420__    348 AAAAAATAAGATTACCGATAAGGTGAAATCAGCCG--ATAAACAT--GTC    393

BSNT_01582___    436 ---AATGTTTACGTTTCAGCTAACCCTGATTTTGTAGAGCGTATGCAAGA    482
                        |.|||.||.||.|||||.|||||.||.||.||.||.||||||||||.
RBAM_009420__    394 CGGACTGTATATGTATCAGCGAACCCGGACTTCGTTGAACGTATGCAAGG    443

BSNT_01582___    483 ATATGGAAAGCGTATTCAAAAGGGTGACCCAATCGCCGGATTATTTGATG    532
                     .||.|||||.||.||.|||||.||..|.||..|..||||..|.|||||||
RBAM_009420__    444 CTACGGAAAACGAATCCAAAACGGACATCCTGTATCCGGTCTGTTTGATG    493

BSNT_01582___    533 AATTTATACAAACTGTACAGCGCGTATTCCCTAACCC---TGAATAA    576
                     ||||....||||..||.|||||.||||||||.|||||   |.|||||
RBAM_009420__    494 AATTCGGTCAAATGGTGCAGCGTGTATTCCCAAACCCCAATAAATAA    540


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