Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01543 and RBAM_009390
See
Amino acid alignment /
Visit
BSNT_01543 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_01543___yhcK.1.9828.seq
# -bsequence dna-align/RBAM_009390___yhcK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01543___yhcK-RBAM_009390___yhcK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01543___yhcK-RBAM_009390___yhcK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01543___yhcK
# 2: RBAM_009390___yhcK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1179
# Identity: 746/1179 (63.3%)
# Similarity: 746/1179 (63.3%)
# Gaps: 198/1179 (16.8%)
# Score: 2178.0
#
#
#=======================================
BSNT_01543___ 1 TTGCTGAAAGAACTGTTTGTAAATTTCACCATTTTAATCACATTTAATTA 50
.|||||||.|||||||||.|.|||||.||.||||||||||||||||||||
RBAM_009390__ 1 ATGCTGAAGGAACTGTTTCTTAATTTGACGATTTTAATCACATTTAATTA 50
BSNT_01543___ 51 TCTCTTCACCCACCTGTTTAAAGAAAGGCTAGTACATAAAAAAGACAGCA 100
||||||||||...||.||||||||...|||...|||||||.|||||.|
RBAM_009390__ 51 TCTCTTCACCGTTCTTTTTAAAGAGTCGCTTTCACATAAAGAAGACCG-- 98
BSNT_01543___ 101 TATC----TTTTCAAGCTGTTA---AAGGACTGGCCTGCGGTTTGC---- 139
|| .|||||| ||| |||| || |||||||||
RBAM_009390__ 99 --TCCGATGTTTCAA----TTACTGAAGG---GG---GCGGTTTGCGGGC 136
BSNT_01543___ 140 ---TCGGGGTTATTCTGATGGTTTTTGGATTTACCTA-TCAGCATTCAAT 185
|.||||||.|||||||.|.|||.||.|||.|.|| ||.| ||||.||
RBAM_009390__ 137 TTTTAGGGGTTTTTCTGATTGCTTTCGGCTTTTCTTACTCCG-ATTCCAT 185
BSNT_01543___ 186 TATTGATCTTCGAAATATCCCTATTATGATTGCCGCTCTTTATGGAGGCT 235
.||||||||..||||||||||.|||||.||.|||||||||||.|||||||
RBAM_009390__ 186 CATTGATCTCAGAAATATCCCCATTATCATCGCCGCTCTTTACGGAGGCT 235
BSNT_01543___ 236 GGGTTTCAACGGCAACGGCCCTGGCCATGATCACTGCAGGCCGCTTGCTG 285
||||.||.||.|||.|.|||.|...|||.|||...||||||||..|.|||
RBAM_009390__ 236 GGGTGTCTACAGCAGCTGCCTTTTTCATTATCGTGGCAGGCCGTATCCTG 285
BSNT_01543___ 286 ----ATTACGATGAACACATCTGCACTATACTCGGTTATTATCATTTGTA 331
|||.|.||| .|.||.|.|| ||| ||.||
RBAM_009390__ 286 ATCAATTTCAATG------CCAGCGCCAT---------TTA----TTCTA 316
BSNT_01543___ 332 TCGCTGCCATTCCGTCACTCATTG------TTTCT------------AGA 363
||||.||..| ||.|| |.|||| ||||| |||
RBAM_009390__ 317 TCGCCGCAGT--CGGCA-TGATTGCGATACTTTCTGTGGCCGTATTCAGA 363
BSNT_01543___ 364 AGAAAAA-----AAGTTCAACTAAAACATGCTTTC--TA------TCTTT 400
.|||||| || ||| .|||.||||.||| || |||||
RBAM_009390__ 364 GGAAAAAAGCCGAA--TCA---CAAAAATGCGTTCGTTATGCTGCTCTTT 408
BSNT_01543___ 401 TAATCATCACAAATAGCT-TGATCTCCTT----TTCCTTTTATTTTCTTA 445
| ||||| |.| |.|||.||.| .|.||.||| ||||
RBAM_009390__ 409 T--------CAAAT-GTTATTATCACCCTGACGCTGCTGTTA----CTTA 445
BSNT_01543___ 446 TAGATTTACATTCATAC---GAACTTCATTTGTATTTTTGGATCATATCA 492
|...|..||| .|.|.| |..|.||.|| |||||||||.||||.||
RBAM_009390__ 446 TGCCTGAACA-GCCTGCCGGGGCCCTCGTT--TATTTTTGGCTCATTTC- 491
BSNT_01543___ 493 ATAGC--GGGCGGCATGCTCAGT--TTATATATTATTGATCATGAAACAA 538
||.| ||||||.||||| || .|.|||||.|||.|.||.|||.|..
RBAM_009390__ 492 -TACCTTGGGCGGAATGCT--GTCGCTGTATATCATTAAACACGAAGCCG 538
BSNT_01543___ 539 ATGCACATCTTCTTTTTAAACAATATAAGTTTCAGGCGCACTTTGACTTT 588
||||.|..|||.|.||.||.|||||.||||||||.|||.|.|.|||.|||
RBAM_009390__ 539 ATGCCCGCCTTTTGTTCAAGCAATACAAGTTTCAAGCGAATTATGATTTT 588
BSNT_01543___ 589 TTAACAGGCGTGTATAACCGAAGAAAATTTGAAGAAACCACGAAAGCTCT 638
.|.||.||..|.|.|||....||||||||.||.|||..|.||...|.|||
RBAM_009390__ 589 CTGACGGGGATTTTTAATAAGAGAAAATTCGAGGAAGTCTCGCGCGTTCT 638
BSNT_01543___ 639 GTATCAGCAGGCGGC-CGATACCCCGCATTTTCAATTTGCACTGATTTAT 687
|||..|.|.||||.| |.||.||||.| .|.|||..|.||.||.||||||
RBAM_009390__ 639 GTACGATCGGGCGTCTCAATCCCCCTC-GTCTCAGCTCGCGCTTATTTAT 687
BSNT_01543___ 688 ATGGATATCGATCATTTTAAGACCATCAATGACCAATATGGCCATCATGA 737
.|||||||.|||||.||||||...||||||||.|||||.||||||.||||
RBAM_009390__ 688 TTGGATATTGATCACTTTAAGCAGATCAATGATCAATACGGCCATTATGA 737
BSNT_01543___ 738 AGGAGATCAGGTGCTCAAAGAGCTGGGGTTACGTCTGA-----------A 776
|||.||.||.|||||.||.||.||||||...||.|||| |
RBAM_009390__ 738 AGGGGACCAAGTGCTGAAGGAACTGGGGGCGCGCCTGAGGCTCTTACTCA 787
BSNT_01543___ 777 GCAGAGCATCCGAAATACAGATCCTGCCGCTCGGATCGGCGGTGAAGAAT 826
|||| |.|.|||||..|.||.||.||||||||.|||||||
RBAM_009390__ 788 GCAG-----------TTCTGATCCGTCAGCCCGCATCGGCGGGGAAGAAT 826
BSNT_01543___ 827 TTGCCGTTCTCCTGCCGAACTGTTCTCTTGAT---AAAG-----CAGCCC 868
|||||||.||..||||.||.|| |.|.| || |||| ||.|
RBAM_009390__ 827 TTGCCGTGCTTATGCCCAATTG--CACGT-ATACAAAAGGGCTTCACC-- 871
BSNT_01543___ 869 GAATCGCTGAACGGATCAGGAGAACTGTAAGTGATGC---ACCGATTGTA 915
||||.|||...||||||...|| .|.|||.|| .||||||.|.
RBAM_009390__ 872 ---TCGCAGAAGAAATCAGGCACAC---GATTGACGCGAACCCGATTCTG 915
BSNT_01543___ 916 TTAACAAACGGTGA-AGAGCTTTCAGTTACGATATCACTAGGGGCCGCTC 964
.|.||.|.|||.|| |.| .||.|.||.||..|.||.||.||...|||.|
RBAM_009390__ 916 CTGACGAGCGGAGATACA-ATTCCCGTGACCGTTTCCCTCGGCATCGCGC 964
BSNT_01543___ 965 ATTACCCCAATAATACGGAACAGCCAGGATCC-------TTGCCCATTCT 1007
||||.||.|..||| |||.| |||||| ||||||.|..|
RBAM_009390__ 965 ATTATCCGACAAAT-----ACATC--GGATCCTCAGACATTGCCCCTGAT 1007
BSNT_01543___ 1008 TGCCGATCAAATGCTTTACAAAGCGAAAGAAACGGGACGGAA-CAGAGTG 1056
.||.||.|..|||||.||||||||||||..|.|.||.||.|| || ||||
RBAM_009390__ 1008 CGCGGACCGGATGCTGTACAAAGCGAAAACATCAGGGCGCAATCA-AGTG 1056
BSNT_01543___ 1057 TGTTTTTCA-----GAAAAAAAAGAATGA 1080
|| || |||||||||||||||
RBAM_009390__ 1057 TG-----CAGCACTGAAAAAAAAGAATGA 1080
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.