Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01534 and RBAM_009320

See Amino acid alignment / Visit BSNT_01534 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:13
# Commandline: needle
#    -asequence dna-align/BSNT_01534___yhcE.1.9828.seq
#    -bsequence dna-align/RBAM_009320___yhcE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01534___yhcE-RBAM_009320___yhcE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01534___yhcE-RBAM_009320___yhcE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01534___yhcE
# 2: RBAM_009320___yhcE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 823
# Identity:     523/823 (63.5%)
# Similarity:   523/823 (63.5%)
# Gaps:         116/823 (14.1%)
# Score: 1412.5
# 
#
#=======================================

BSNT_01534___      1 ATGAATTCTTTTTTAGGTTTATTAAAGAAAGATATCAAGCTTTCAAGAAT     50
                     ||||..||.|||||||||||..|.||.||||||...||..|||||.|.||
RBAM_009320__      1 ATGACATCGTTTTTAGGTTTGCTGAAAAAAGATGCGAAAGTTTCATGGAT     50

BSNT_01534___     51 GTGGCT-GCTATTATGGATATGCGGAATCATTTTCT-----TATTGGGAA     94
                     .||||| || ..|.|||.|.|||||.||.||||.||     | |||    
RBAM_009320__     51 TTGGCTCGC-GGTGTGGCTTTGCGGCATGATTTGCTGGGCGT-TTG----     94

BSNT_01534___     95 CAGGCCATATTATAGCTTCTCG-CACGAAAGAACCTCTAGTCATTTTTGG    143
                     |||.|||..|.||.|||.|.|| || |||||||||.||.||||||||.||
RBAM_009320__     95 CAGCCCACGTCATCGCTGCCCGTCA-GAAAGAACCGCTCGTCATTTTCGG    143

BSNT_01534___    144 TTTTTTTGTTGCAGTTGCTTTTTTTCTGCTTTTCT--TATCTCCTGTTTT    191
                     .||||||...|||.|.|..|||||||  ..|||||  ||.|.||..||||
RBAM_009320__    144 CTTTTTTACGGCAATGGGGTTTTTTC--AATTTCTTGTAGCGCCGCTTTT    191

BSNT_01534___    192 TGTGTTTTATCACCTTCGCAAGGAAGGGAAATCACAGCTTTGGCTGTACA    241
                     |.|||..||||||||||..||.|||||.|||...|||||.|||||.||||
RBAM_009320__    192 TATGTACTATCACCTTCATAAAGAAGGAAAAAATCAGCTGTGGCTTTACA    241

BSNT_01534___    242 ATCCAAATGGCGGCTTATGGCTGTTTTCTTCTAAATTGGCAGCATCTTTG    291
                     ||||.|||||.||.||.|..|||.|..||||.||..||.|.||.||..||
RBAM_009320__    242 ATCCGAATGGAGGATTTTATCTGCTGGCTTCCAAGCTGACGGCCTCACTG    291

BSNT_01534___    292 CTCTATCAATTTGTGAT---TCAGTTGGCATTAACAGCCTATGGCATATG    338
                     ||.|||||.|   ||||   .|||.||||..|.||.|..||.|||||.||
RBAM_009320__    292 CTGTATCAGT---TGATCGGGCAGCTGGCGCTGACCGGTTACGGCATTTG    338

BSNT_01534___    339 GATGTATCATATGCTCTCTGTAAAA-AATCTGCTGGAGCATCA--AGT--    383
                     ||||||.|..|||||.||||.|||| .|.| ||||||.|| ||  |.|  
RBAM_009320__    339 GATGTACCGGATGCTTTCTGCAAAAGGAGC-GCTGGAACA-CACCATTCC    386

BSNT_01534___    384 --TG--------ATATAACGAGTACAGTG---GCTT---TGCTGAATATG    417
                       ||        || ||||..|   |.||   ||||   ||||| ||..|
RBAM_009320__    387 CCTGGCCGGCACAT-TAACCGG---ACTGAATGCTTACCTGCTG-ATCAG    431

BSNT_01534___    418 TATGGGCTTATTTCTTCGTTAGATATGTCA--GTAACAGTCATTGTGTTT    465
                     | |..||.|||||         ||.|||.|  ||..|.|||      |||
RBAM_009320__    432 T-TCAGCGTATTT---------ATCTGTGATCGTGGCCGTC------TTT    465

BSNT_01534___    466 TGGACTGTTTTTCACTCTCTCAGAAATTGGCGCGGAATGCGGTGGG----    511
                     |||||||||||||||||..|.|.|.||...|.||...|.||.||||    
RBAM_009320__    466 TGGACTGTTTTTCACTCATTAAAACATGTTCCCGTCCTCCGTTGGGTGAT    515

BSNT_01534___    512 CTGCGATGGTTCTGTTG-GTTGCAGTGTGG----TTATTCTTCGATGAAT    556
                     |||| ||.||.|  ||| |||  .||.|||    .||||    ||.||..
RBAM_009320__    516 CTGC-ATCGTGC--TTGCGTT--TGTCTGGACCTATATT----GACGATA    556

BSNT_01534___    557 ACATCATAAGCCCTTTGGTTGAATCTCAAAAGCATTTCTGGCCGGTAACA    606
                     |.|||||.|..|||||...|..|||||||.|..||||.||||||||||.|
RBAM_009320__    557 AAATCATTACGCCTTTCACTTCATCTCAACATGATTTATGGCCGGTAAAA    606

BSNT_01534___    607 GTCTATTGC-AATTTTGATTTCCACT-TCCACAAT-----GTTTGGAGAT    649
                     ||.|| ||| .||||||||||.|||| |.||.|||     |..||||...
RBAM_009320__    607 GTGTA-TGCGGATTTTGATTTTCACTATACAAAATTGACCGGCTGGACGG    655

BSNT_01534___    650 TGGAACTAAAACCTATCCATCTGTCTGTGCTAGGGTTTCCTATTACT-TT    698
                     ||||.||.||..||.||||..|.||   |||    ||||...||.|| ..
RBAM_009320__    656 TGGAGCTGAAGGCTGTCCACATCTC---GCT----TTTCAGCTTCCTGGC    698

BSNT_01534___    699 AGTCATCACGTTCTTGCTGCTCATC---------ATGGCTTCAAAACTGC    739
                     |||.||  |||.|||||.||.| ||         .||||.||.|..||||
RBAM_009320__    699 AGTGAT--CGTGCTTGCGGCGC-TCTGTCTCGCGCTGGCCTCTATGCTGC    745

BSNT_01534___    740 TTGATCGTAAAGTAGAGGTGTAA    762
                     |..||||.||.||.|||||||||
RBAM_009320__    746 TGAATCGAAAGGTTGAGGTGTAA    768


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01534 and RBAM_009320

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
