Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01532 and RBAM_009310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:12
# Commandline: needle
# -asequence dna-align/BSNT_01532___yhcC.1.9828.seq
# -bsequence dna-align/RBAM_009310___yhcC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01532___yhcC-RBAM_009310___yhcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01532___yhcC-RBAM_009310___yhcC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01532___yhcC
# 2: RBAM_009310___yhcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 408
# Identity: 274/408 (67.2%)
# Similarity: 274/408 (67.2%)
# Gaps: 69/408 (16.9%)
# Score: 895.0
#
#
#=======================================
BSNT_01532___ 1 ATGGCCATTATTATAGCAATAATTGCTGCTGTCATTGTCATTGCGGCCCT 50
|||||||||||||||||..|.|||||||||||||||||.|||||....||
RBAM_009310__ 1 ATGGCCATTATTATAGCGGTTATTGCTGCTGTCATTGTGATTGCACTTCT 50
BSNT_01532___ 51 TATTACATTTAACGTCCGCAACGCCTCACCTGGAC-------CTGAGAAG 93
|||.|||||.||.|||||||.|.|.||..|.|||| |..|||||
RBAM_009310__ 51 TATCACATTCAATGTCCGCAGCACTTCTGCAGGACAGGATGTCAAAGAAG 100
BSNT_01532___ 94 CA-----AGAAGCAACTGATAGAATCGCACCTCCAGAAGA------GGAA 132
.| |||||| |||.| ||| ||.|||..|| ||||
RBAM_009310__ 101 AAAAGAGAGAAGC----GATCG----GCA-CTACAGCCGAACAGCCGGAA 141
BSNT_01532___ 133 AAAAACGAAGCGCATTACCCTGCTGAAGCAAGGGCT--GCCGAGCATACG 180
|| ||||.|.||.||.||.| ||.||| |||||||||.|.
RBAM_009310__ 142 AA---------GCATGATCCGGCCGAGG--AGCGCTCAGCCGAGCATGCT 180
BSNT_01532___ 181 CCATCCGTTGTCAAAAAC-GATTCTCC--------AAAAGAGAAGCGTGA 221
|||..|||||| ||||.| ||.||||| |||||| |
RBAM_009310__ 181 CCAGTCGTTGT-AAAATCTGAATCTCCCCGTGAGAAAAAGA--------A 221
BSNT_01532___ 222 CACAATGGGTGATGATATTTACAGGCAGGCGCTGCAAAAGTTTAAGCATT 271
.||||||||.||||||.|.|||.|.||||||||.||.|||||||||..||
RBAM_009310__ 222 TACAATGGGCGATGATGTGTACCGTCAGGCGCTTCAGAAGTTTAAGACTT 271
BSNT_01532___ 272 CTGATGA-AGTTCATGCAGAAGAAGAGGTCACTGAGGAAAGTGAC---AA 317
|||| || .|.|||.|.|..|.|.|| || || ||.||.|.| ||
RBAM_009310__ 272 CTGA-GACGGATCAGGAACCAAACGA--TC-CT---GATAGCGGCGGTAA 314
BSNT_01532___ 318 AATGCAGGACCGCAGCTATCGTGATGCGCTGCTCTCTATGAAAAATAAGA 367
|||||||||..|||||||||||||||||||||||||..|.|||||.||.|
RBAM_009310__ 315 AATGCAGGATAGCAGCTATCGTGATGCGCTGCTCTCCTTAAAAAACAAAA 364
BSNT_01532___ 368 AAAAGTAA 375
|.||||||
RBAM_009310__ 365 AGAAGTAA 372
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