Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01531 and RBAM_009300

See Amino acid alignment / Visit BSNT_01531 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:12
# Commandline: needle
#    -asequence dna-align/BSNT_01531___yhcB.1.9828.seq
#    -bsequence dna-align/RBAM_009300___yhcB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01531___yhcB-RBAM_009300___yhcB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01531___yhcB-RBAM_009300___yhcB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01531___yhcB
# 2: RBAM_009300___yhcB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 535
# Identity:     439/535 (82.1%)
# Similarity:   439/535 (82.1%)
# Gaps:           5/535 ( 0.9%)
# Score: 1800.0
# 
#
#=======================================

BSNT_01531___      1 ATGAAAATTTATGTAGTGTATGATAGTGAAGGCGAACATACTAAAGTGCT     50
                     |||||||||||.||||||||.||||||||||||||||||||.|||...||
RBAM_009300__      1 ATGAAAATTTACGTAGTGTACGATAGTGAAGGCGAACATACAAAACACCT     50

BSNT_01531___     51 TGCAGAAGCGATTGCTGAAGGCGCGAGAGAAAACGGCGCGGCTGAAGTGT    100
                     |||.|||||.|||||.|||||.||..|||||||||..|.|||||||||..
RBAM_009300__     51 TGCTGAAGCCATTGCCGAAGGAGCACGAGAAAACGCTGAGGCTGAAGTCC    100

BSNT_01531___    101 TCATCGACCATGTAGATCAGGCTGATATCCGCAAGCTTAAAGATATGGAT    150
                     |.|||||||||||.|||||.||.||.|||||||||||.|||||.||||||
RBAM_009300__    101 TGATCGACCATGTCGATCAAGCAGACATCCGCAAGCTGAAAGACATGGAT    150

BSNT_01531___    151 GCGATTATTTGGGGATGCCCAGGGCATTTCGGAACAATCAGCTCCGGTCT    200
                     ||.|||||.|||||||||||.||.||.||.||.||.|||||.||.|| ||
RBAM_009300__    151 GCCATTATCTGGGGATGCCCGGGACACTTTGGCACCATCAGTTCAGG-CT    199

BSNT_01531___    201 TAAAA-CTTGGATCGACAGACTTGGCTACTTGTGGGCTGAAGGCGAGCTG    249
                     ||||| |.||||||||||||||.|||||..||||||||||||||||||||
RBAM_009300__    200 TAAAAGCGTGGATCGACAGACTCGGCTATCTGTGGGCTGAAGGCGAGCTG    249

BSNT_01531___    250 ATCAACAAAGTCGGTGCTGTCTTCTGCACAACGGCAACAACACACGGCGG    299
                     ||..|.||||||||.||.||.|||||.||.|||||.||||||||.|||||
RBAM_009300__    250 ATTGATAAAGTCGGCGCCGTATTCTGTACGACGGCGACAACACATGGCGG    299

BSNT_01531___    300 CTTGGAAATGACAATGCACAATTTAATCACGCCGATGTTCCACCAAGGCA    349
                     .||.||||||||||||||||||.|.|||||.||.|||||.||||||||||
RBAM_009300__    300 ATTAGAAATGACAATGCACAATCTGATCACTCCTATGTTTCACCAAGGCA    349

BSNT_01531___    350 TGATTGTTGTCGGACTGCCTGGGAACGTGCCTGAAAACGCACTTTATGGC    399
                     ||||||||||||||||.||.||.|||||.|||||||||||.||.||.||.
RBAM_009300__    350 TGATTGTTGTCGGACTTCCCGGCAACGTTCCTGAAAACGCGCTGTACGGT    399

BSNT_01531___    400 TCTTATTACGGAGCAGGTGTCACTTGTCCGGTAGACAGTGATGAGTTAAT    449
                     |||||.|||||.||.||.|||||.||.|||||.|||||.||||.|.|.||
RBAM_009300__    400 TCTTACTACGGCGCGGGCGTCACATGCCCGGTTGACAGCGATGTGCTGAT    449

BSNT_01531___    450 GTCTGAGGAAGGTATTCAGCTTGGACGCGCGTTGGGAAGACGTGTCAGCC    499
                     |.|.||.|||||..||||..|.||.||.|||.|.||.|||||||||||||
RBAM_009300__    450 GACGGAAGAAGGCCTTCAATTAGGCCGTGCGCTTGGCAGACGTGTCAGCC    499

BSNT_01531___    500 AAGTCACAGGAAACCTAACAGC---AGGACAGTAA    531
                     ||||||||||.||.|||||.||   |.||||||||
RBAM_009300__    500 AAGTCACAGGTAATCTAACTGCCGGACGACAGTAA    534


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