Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01509 and RBAM_009160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:11
# Commandline: needle
# -asequence dna-align/BSNT_01509___ygaO.1.9828.seq
# -bsequence dna-align/RBAM_009160___ygaO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01509___ygaO-RBAM_009160___ygaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01509___ygaO-RBAM_009160___ygaO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01509___ygaO
# 2: RBAM_009160___ygaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 517
# Identity: 330/517 (63.8%)
# Similarity: 330/517 (63.8%)
# Gaps: 92/517 (17.8%)
# Score: 1016.5
#
#
#=======================================
BSNT_01509___ 1 ATGAGCATGAAAACAAAAGCAGCTTTTCACCTTGTTTTAT-----TTGGC 45
|||||..||||||.||||||...|||||||||||...|.| |||||
RBAM_009160__ 1 ATGAGTTTGAAAAGAAAAGCGTGTTTTCACCTTGCACTCTACGGATTGGC 50
BSNT_01509___ 46 CTTGCATGCTGGGCGCTGATTTCATACTTT---GAAGC------------ 80
| ||||||.||||.||||| |||| |||||
RBAM_009160__ 51 C-----TGCTGGACGCTTATTTC---CTTTATGGAAGCGGCGCCGCGGAT 92
BSNT_01509___ 81 --CTCAGAAGACATAGCATCTTTTTTCGGCACAAA--GAGCGGCGGGA-T 125
||||| |||||| |||| ||| |||| .
RBAM_009160__ 93 CGCTCAG--------------TTTTTC----CAAACGGAG----GGGAGC 120
BSNT_01509___ 126 GGT--ATTTGATTTAAACCTCACTCCCTTTATTCTGTTT---GT---TGC 167
||| ||||||..|.||..|||||||.|||.|.|||||| || |||
RBAM_009160__ 121 GGTTCATTTGAGCTGAATATCACTCCGTTTCTGCTGTTTACCGTTTGTGC 170
BSNT_01509___ 168 GGCGTCTGCGGTTTATTTGT-CCTTACAGAAAAA---AAGCCGCCCTGCC 213
.||.| .||.|||.|.| ||..|.||||||| ||.| |.|
RBAM_009160__ 171 CGCAT----TGTATATCTATGCCGAAAAGAAAAAGCGAAAC------GGC 210
BSNT_01509___ 214 AGAAAGCAGCTACTTCTGCCTGATGAGTTTGAAGAGCAGGATGAAAGAGA 263
|.||||||....|||.|.||.|||||.|||||.||.||||||||||||||
RBAM_009160__ 211 AAAAAGCACAGGCTTGTACCCGATGAATTTGAGGAACAGGATGAAAGAGA 260
BSNT_01509___ 264 GCAGATGATGACGGCAAAAGCATGCCGCGCGTCATATATCGCTGTCTACT 313
.|..|||||||||||.|||||.|||||..|.||.||||||||.||.||||
RBAM_009160__ 261 ACGAATGATGACGGCTAAAGCTTGCCGTTCCTCGTATATCGCCGTTTACT 310
BSNT_01509___ 314 TCTCGCTGCCTGCCGCAGCGGTTCTTCTCATTTTTTATCCGCTATTTCAA 363
||||..||||.||||||||.|||||.||..|.|||||||||||..||||.
RBAM_009160__ 311 TCTCATTGCCGGCCGCAGCCGTTCTGCTTTTGTTTTATCCGCTGATTCAG 360
BSNT_01509___ 364 TCGCGCATTCCGTTTTTCCCTATTATTATTG-TGTTTATCATCATGATCA 412
.|||...|.||.|||||.||.|||.|| ||| |.||.||..|.|||||.|
RBAM_009160__ 361 CCGCATCTACCCTTTTTTCCGATTCTT-TTGATTTTCATTCTGATGATGA 409
BSNT_01509___ 413 TCCAGCACCTTT--CCTACGTCATCTCTTTCAAGAAAAACGAAAAAAACT 460
|.||||| ||| |.||.||..||.||||..|.||..|||..|||||||
RBAM_009160__ 410 TTCAGCA--TTTGGCTTATGTTTTCACTTTTCATAAGCACGGCAAAAACT 457
BSNT_01509___ 461 CCGGCGCGCTGTAA--- 474
|||| .|.|
RBAM_009160__ 458 CCGG------TTCATGA 468
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