Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01504 and RBAM_009130

See Amino acid alignment / Visit BSNT_01504 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:11
# Commandline: needle
#    -asequence dna-align/BSNT_01504___ssuC.1.9828.seq
#    -bsequence dna-align/RBAM_009130___ssuC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01504___ssuC-RBAM_009130___ssuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01504___ssuC-RBAM_009130___ssuC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01504___ssuC
# 2: RBAM_009130___ssuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 863
# Identity:     621/863 (72.0%)
# Similarity:   621/863 (72.0%)
# Gaps:          61/863 ( 7.1%)
# Score: 2181.0
# 
#
#=======================================

BSNT_01504___      1 ATGATGAAAGCAGA---------GGCTGCGGGCTCGCTGCCCAAAACGAA     41
                        |||||||||||         ||||||.|||     ||...||.|.||
RBAM_009130__      1 ---ATGAAAGCAGAAGCATCAACGGCTGCCGGC-----GCAATAAGCCAA     42

BSNT_01504___     42 TGCGGAAGCGGTGCGAAAAAAG------------CCCGGAAGGAAGAGAT     79
                     | |.|||        ||.||||            ||||||| |.|...||
RBAM_009130__     43 T-CAGAA--------AAGAAAGCTCTGGCAACTTCCCGGAA-GTATTCAT     82

BSNT_01504___     80 AC----GGCTTTATGAAGGGGCTTTTACTGCCCGCTGTCATCATTGCCAT    125
                     ||    ||    |||||.|||.||.||||.||.||||...||||.||..|
RBAM_009130__     83 ACCAATGG----ATGAAAGGGATTGTACTCCCGGCTGCGGTCATCGCAGT    128

BSNT_01504___    126 CTGGCAGGTCATCGGCGGGCTGGGGATTGTGTCCGCTACAGTGCTGCCTA    175
                     .||||||||.||||...|.|||||.||.||.||..|.||.|||||.||..
RBAM_009130__    129 ATGGCAGGTTATCGCAAGTCTGGGCATCGTCTCGACAACGGTGCTCCCGT    178

BSNT_01504___    176 CACCTGTTACG--ATTGTTCTGACCTTTAAGGAGCTTATTTTGTCCGGCG    223
                     |||||||  ||  ||..|.|.|||.|||.||||.|||.||.|.||.||.|
RBAM_009130__    179 CACCTGT--CGTCATCTTGCAGACGTTTCAGGAACTTCTTCTTTCAGGTG    226

BSNT_01504___    224 AACTGTTCGGCCATCTGCAAATCAGCATTTAT--CGGGCGGC-GCTTGGT    270
                     ||||||..||.|||.|..|.|||||  |||||  .||||||| || .||.
RBAM_009130__    227 AACTGTGGGGTCATTTAGAGATCAG--TTTATACAGGGCGGCTGC-CGGA    273

BSNT_01504___    271 TTTTTGCTTGGCGCAGGGCTTGGA-TTGATGATCGGGATTTTGGCCGGAT    319
                     |||.||||||||||.||.||.||| ||| |..|||||.|..|||.|||.|
RBAM_009130__    274 TTTCTGCTTGGCGCGGGCCTCGGACTTG-TTTTCGGGCTGCTGGTCGGTT    322

BSNT_01504___    320 TCTCCAAACGGACGG-AGCTGTATCTTGATCCGTCGTTGCAAATGCTTAG    368
                     ||||.||.||||||| ||| .|||||.||||||||..||||||||||.||
RBAM_009130__    323 TCTCAAAGCGGACGGAAGC-ATATCTAGATCCGTCTCTGCAAATGCTCAG    371

BSNT_01504___    369 AACCGTACCTCATCTGGCCGTCACGCCGCTGTTTATTTTATGGTTCGGAT    418
                     |||.||.||.||..|||||||.||.||.|||||||||||.||||||||.|
RBAM_009130__    372 AACGGTTCCGCACTTGGCCGTGACTCCTCTGTTTATTTTGTGGTTCGGGT    421

BSNT_01504___    419 TTGACGAAGTATCTAAAATTTTGCTGATTGCGCTCGGTGCCTTCTTTCCT    468
                     ||||.||...|||.||||||.|||||||.||..|.||.||.||.||.||.
RBAM_009130__    422 TTGATGAGACATCAAAAATTCTGCTGATCGCATTAGGGGCTTTTTTCCCC    471

BSNT_01504___    469 GTCTATATCAATACGTTTAACGGCATCCGCGGGGTTGACGCGAAGCTGTT    518
                     ||.||.||.|||||||||..|||.||||||.|.||.||||||||||||||
RBAM_009130__    472 GTGTACATTAATACGTTTCTCGGAATCCGCAGTGTGGACGCGAAGCTGTT    521

BSNT_01504___    519 TGAAGTCGCCCGGGTGCTTGAATTTAAATGGCATCAGCAAATATCCAAAG    568
                     |||.|||||.||||||||.||||||||.|||.|||||||.||..|.|||.
RBAM_009130__    522 TGACGTCGCACGGGTGCTGGAATTTAACTGGTATCAGCAGATGACGAAAT    571

BSNT_01504___    569 TGATATTGCCGGCAGCCCTGCCCAATATATTGCTAGGCATTCGCTTATCG    618
                     |.||..|.||||||.|.|||||.|||||..||||.|||||..|..|.||.
RBAM_009130__    572 TAATTCTTCCGGCATCTCTGCCGAATATCCTGCTCGGCATCAGGCTCTCT    621

BSNT_01504___    619 CTCGGCATTGCATGGCTCGGGCTCGTTGTGGCAGAGCTGATGGGCTCAAG    668
                     ||.||||||||.||||||||.|||||.|||||.||.||||||||.||.||
RBAM_009130__    622 CTGGGCATTGCGTGGCTCGGTCTCGTGGTGGCGGAACTGATGGGATCGAG    671

BSNT_01504___    669 CGCGGGAGTCGGCTATATGATCATGGATGCGAGACAGTTTTCACAAACGA    718
                     ||.|||.|||||.||||||||.||||||||.|||||.||||||||.||.|
RBAM_009130__    672 CGAGGGCGTCGGTTATATGATTATGGATGCCAGACAATTTTCACAGACAA    721

BSNT_01504___    719 ATAAAGTCTTTGCAGGGATTATCATTTTTGCAGTGGTTGGAAAGCTGACG    768
                     ||||.||.||||..||.||||||||||||||.|..||.||.||||||||.
RBAM_009130__    722 ATAAGGTGTTTGTCGGCATTATCATTTTTGCGGCTGTCGGCAAGCTGACA    771

BSNT_01504___    769 GATTCCTTCGTCAGGCTGCTTGAACGAAAGCTGTTAAAGTGGAGAAACAG    818
                     |||.|.||.|||||..||||.|||||.||.||.|||||.|||.|.|||||
RBAM_009130__    772 GATGCATTGGTCAGAATGCTCGAACGGAAACTATTAAAATGGCGGAACAG    821

BSNT_01504___    819 CTACGAAGGATAA    831
                     .||.|||||.|||
RBAM_009130__    822 TTATGAAGGGTAA    834


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01504 and RBAM_009130

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
