Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01502 and RBAM_009120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:10
# Commandline: needle
# -asequence dna-align/BSNT_01502___ssuA.1.9828.seq
# -bsequence dna-align/RBAM_009120___ssuA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01502___ssuA-RBAM_009120___ssuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01502___ssuA-RBAM_009120___ssuA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01502___ssuA
# 2: RBAM_009120___ssuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1017
# Identity: 754/1017 (74.1%)
# Similarity: 754/1017 (74.1%)
# Gaps: 45/1017 ( 4.4%)
# Score: 2714.5
#
#
#=======================================
BSNT_01502___ 1 ATGAAAAAAGGACTCATTGTATT---GGTTGCCGTTAT-TTTTCTGCTCG 46
.||||||||....|||||.|.|| .|..||.||.|| .|.||.|| ||
RBAM_009120__ 1 GTGAAAAAAATCATCATTCTTTTAGCCGCAGCAGTCATGATGTCAGC-CG 49
BSNT_01502___ 47 CAGGCTGTGGAG-CA--AATGGAGCCAGCGGTGACCACAAACAATTGAAG 93
.|.||.|||.|| || |..||||..||||| || |||| ..||||.
RBAM_009120__ 50 GATGCAGTGCAGACAGGACAGGAGGGAGCGG-GA----AAAC-GGTGAAA 93
BSNT_01502___ 94 GAAATTCGTATTGGTATTCAGCAAAGCTTAAGCCCGCTTTTGATCGCAAA 143
|||||.||.||.||.||.|||||.||.||||||||||||.|.||.||.||
RBAM_009120__ 94 GAAATCCGGATCGGCATCCAGCAGAGTTTAAGCCCGCTTCTCATTGCCAA 143
BSNT_01502___ 144 AGAAAAAGGCTGGTTCGAAGATGCATTTGAAAAAGAAGGCATCAAAGTGA 193
.||||||||||||||.|||||.||.||..|||||||.||.||.|||||.|
RBAM_009120__ 144 GGAAAAAGGCTGGTTTGAAGAGGCCTTCAAAAAAGACGGAATAAAAGTAA 193
BSNT_01502___ 194 AATGGGTGGAGTTTCAAAGCGGTCCGCCCCAATTTGAAGGCCTTGCGGCA 243
|||||||.||.||.|||||||||||.||.||.||||||||.|||||.||.
RBAM_009120__ 194 AATGGGTCGAATTCCAAAGCGGTCCTCCGCAGTTTGAAGGTCTTGCCGCC 243
BSNT_01502___ 244 GACAAACTTGATTTTTCTCAAGTCGGTAATTCGCCTGTGATCGCTGGACA 293
||.||.|||||||||||.||.|||||.|||||.||.||.||..|.||.||
RBAM_009120__ 244 GATAAGCTTGATTTTTCCCAGGTCGGCAATTCACCGGTCATTTCCGGTCA 293
BSNT_01502___ 294 GGCGGCAGGCATTGACTTTAAAGAAATCGGTTTGTCTCAGGACGGCTTGA 343
||||||.||.|||||.||||||||.|||||..|||||||||||||.||.|
RBAM_009120__ 294 GGCGGCTGGAATTGATTTTAAAGAGATCGGGCTGTCTCAGGACGGGTTAA 343
BSNT_01502___ 344 AAGCAAACGGCATCCTTGTCAATCGAAA---CAGCGGCATTCAAGA-CGT 389
|.|||||.|||||.||.||.|| .|| ||||||.|||| ||| |.|
RBAM_009120__ 344 AGGCAAATGGCATTCTCGTAAA---CAAGGGCAGCGGGATTC-AGAGCCT 389
BSNT_01502___ 390 TAAGGGCTTAAAGGGGAAGAAAATTGCAGTCGCCAAAGGCAGCAGCGGGT 439
.||.|..||.||.||.||.|||||.||.||.|||||||||||||||||.|
RBAM_009120__ 390 GAAAGAATTGAAAGGTAAAAAAATCGCTGTAGCCAAAGGCAGCAGCGGCT 439
BSNT_01502___ 440 TTGATTTTTTGTATAAAGCGCTTGATCAAGTGGGGTTGTCAGCTAACGAT 489
||||||||.|.||||||||..|.|||.|||.||||.|.||.||..|.||.
RBAM_009120__ 440 TTGATTTTCTCTATAAAGCTTTAGATAAAGCGGGGCTTTCCGCCGATGAC 489
BSNT_01502___ 490 GTGACAATTATTCAGCTTCAGCCTGATGAAGCAGCTTCCGCATTTGAAAA 539
||.||.||.||.|||||||||||||||||.||.|.||||||.||||||||
RBAM_009120__ 490 GTCACCATCATCCAGCTTCAGCCTGATGAGGCGGTTTCCGCTTTTGAAAA 539
BSNT_01502___ 540 CGGATCTGTTGATGCCTGGTCCATTTGGGAGCCGTACTTGTCCTTAGAAA 589
|..|||.|||||.||.||||||||||||||||||||.|||||..|.||||
RBAM_009120__ 540 CAAATCAGTTGACGCATGGTCCATTTGGGAGCCGTATTTGTCAATTGAAA 589
BSNT_01502___ 590 CAATGAAACACGGAGCAAAAATCCTTGTGAACGGAGAAAGCACAGATTTA 639
|..||.|.|||||.||..||||..|.|.||||||||||||||||||||||
RBAM_009120__ 590 CGCTGCAGCACGGGGCGGAAATATTGGCGAACGGAGAAAGCACAGATTTA 639
BSNT_01502___ 640 TATTCACCGGGTTTTACTTTAGTAAGAACAAAGTTTTCAGAAGAGCATCC 689
|||||.||.|||||.||.|||||.|||||....|||||..||||.||.||
RBAM_009120__ 640 TATTCTCCCGGTTTCACGTTAGTCAGAACGGGATTTTCCAAAGAACACCC 689
BSNT_01502___ 690 AGACGAAGTGGTCCGTTTTCTGAAGGTGTTTAATAAAGCCGTTGTATGGC 739
.||.||.||.|||||.||||||||.|||||.||||||||.||||.|||||
RBAM_009120__ 690 GGATGAGGTTGTCCGATTTCTGAAAGTGTTCAATAAAGCAGTTGCATGGC 739
BSNT_01502___ 740 AAAAGGAACATCTGGGTGAAGCAGCGGACTTATATTCTGACATTAAAGAT 789
||||||||||....|.||||||.|....|||||||.|..|.||.|||.||
RBAM_009120__ 740 AAAAGGAACACAAAGATGAAGCTGTCTCCTTATATGCGAAAATCAAACAT 789
BSNT_01502___ 790 CTCGATAAAAAGGTCGTCGAAAATGTGCTGAAAAATACTGAACCTCTGAA 839
||.|||...||.||||||..|||.|||||.||.||||||||.|||||.||
RBAM_009120__ 790 CTTGATCCGAAAGTCGTCAGAAACGTGCTTAACAATACTGAGCCTCTCAA 839
BSNT_01502___ 840 TGAGGTCATCAGTGACGACATTGTAAAAGCGCAGCAGGAAACAGCAGATT 889
|||....||||.|||.||.|||||.|||||.|||||||||||.||.||||
RBAM_009120__ 840 TGAACCGATCAATGATGATATTGTCAAAGCCCAGCAGGAAACCGCTGATT 889
BSNT_01502___ 890 TTCAATTTCGAACAAAGGCGATAGATAAGAAGATTGATGTGAAGGATGTT 939
||||||.||.||||||.|||||..|||||||.|||.|.||.||.||.|||
RBAM_009120__ 890 TTCAATATCAAACAAAAGCGATTCATAAGAAAATTCAAGTAAAAGACGTT 939
BSNT_01502___ 940 GTCGATAA--CAGTTTTATCAAAAAA--GCATTAAAGGAACATTCCTCAG 985
|||||.|| || |||||.|||||| ||.|.|||.|
RBAM_009120__ 940 GTCGACAATTCA--TTTATTAAAAAAGCGCTTGAAACG------------ 975
BSNT_01502___ 986 GAGGTGAT--CAATGA- 999
||.||| |||..|
RBAM_009120__ 976 --GGGGATGGCAAGTAA 990
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