Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01501 and RBAM_009110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:10
# Commandline: needle
# -asequence dna-align/BSNT_01501___ssuB.1.9828.seq
# -bsequence dna-align/RBAM_009110___ssuB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01501___ssuB-RBAM_009110___ssuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01501___ssuB-RBAM_009110___ssuB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01501___ssuB
# 2: RBAM_009110___ssuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 827
# Identity: 587/827 (71.0%)
# Similarity: 587/827 (71.0%)
# Gaps: 76/827 ( 9.2%)
# Score: 2129.0
#
#
#=======================================
BSNT_01501___ 1 ------------------------------------------GTGGCTGT 8
.|||||||
RBAM_009110__ 1 TTGTTTTTCGATCGCACGCGGCAGAAAGAGAGGGGAAGACAGATGGCTGT 50
BSNT_01501___ 9 GACCATCAGCATCAAAGAAAAGGCATTTGTTCAAGAGGGCCGCAAAAACA 58
.|||||||||||..|||||||.||.||||..||.||.|||||.||||...
RBAM_009110__ 51 AACCATCAGCATACAAGAAAAAGCTTTTGAGCATGAAGGCCGGAAAACGC 100
BSNT_01501___ 59 CGGT-CTTAGAGAACATAGAATTATCAATCGCACCAGGCGAATTTCTAAC 107
|||| ||.| |..|.||.||..|.|||||.|||.|.||.||||||.|.||
RBAM_009110__ 101 CGGTGCTGA-ATGATATTGAGCTGTCAATTGCATCGGGAGAATTTTTGAC 149
BSNT_01501___ 108 GCTTATCGGACCGAGCGGGTGTGGAAAAAGCACCCTGTTAAAGATT-ATT 156
..|.|||||.||||||||.||.||.||||||||.||.||||| ||| |||
RBAM_009110__ 150 TGTCATCGGGCCGAGCGGATGCGGCAAAAGCACGCTTTTAAA-ATTGATT 198
BSNT_01501___ 157 GCAGGGCTTGATTCTGAATATGACGGGAGTGTGGAAATTAACGGCCGCAG 206
||.||.||||||.|.||.|||.|.||...|||...|||.||||||||||.
RBAM_009110__ 199 GCCGGTCTTGATACCGATTATAAAGGCTCTGTCACAATAAACGGCCGCAA 248
BSNT_01501___ 207 CGTAACAGCTCCGGGTATTCAGCAAGGATTTATTTTTCAGGAACACCGCC 256
.|||.|.|..|||||.||.|.|||.||||||||.||||||||.|||||.|
RBAM_009110__ 249 TGTATCGGGACCGGGCATCCGGCAGGGATTTATCTTTCAGGAGCACCGGC 298
BSNT_01501___ 257 TCTTTCCTTGGCTGACTGTTGAGCAGAATATTGCAGCCGACTTGAATTTG 306
|.|||||.||||||||.||..|.||.||.||.||.|||||..|.|||.||
RBAM_009110__ 299 TGTTTCCCTGGCTGACGGTAAAACAAAACATCGCTGCCGATCTCAATATG 348
BSNT_01501___ 307 AATGACCCAAAAGTCAAAC---AAAAGGTGGATGAACTGATCGAGATTGT 353
||.||||| .|.||..| ||||.||||||||.|||||.|||.||||
RBAM_009110__ 349 AACGACCC---GGCCATTCGGAAAAAAGTGGATGATCTGATTGAGGTTGT 395
BSNT_01501___ 354 CAGATTGAAAGGATCGGAAAAAGCATATCCGCGCGAGCTGTCAGGCGGCA 403
|||..||.|.|||.||||.||.||.|||||||||||..|.||.|||||||
RBAM_009110__ 396 CAGGCTGCAGGGAGCGGAGAACGCTTATCCGCGCGAATTATCCGGCGGCA 445
BSNT_01501___ 404 TGTCACAAAGAGTAGCCATCGCCCGGGCCCTTCTGCGGGAGCCTGAGGTG 453
||||.||..|.||.|||||||||.|.||||||.||||.|||||.||||||
RBAM_009110__ 446 TGTCGCAGCGGGTTGCCATCGCCAGAGCCCTTTTGCGCGAGCCGGAGGTG 495
BSNT_01501___ 454 CTGCTTTTAGATGAACCGTTTGGTGCACTCGACGCTTTTACAAGAAAACA 503
||||||||||||||||||||.||.||.||.|||||||||||.||||||||
RBAM_009110__ 496 CTGCTTTTAGATGAACCGTTCGGGGCGCTTGACGCTTTTACGAGAAAACA 545
BSNT_01501___ 504 CCTGCAGGACGTGCTGCTGGATATATGGAG-GAGGAAAAAAACAACGATG 552
..|||||||.||||||||.|||||||||.| || |||||||||.||||||
RBAM_009110__ 546 TTTGCAGGAAGTGCTGCTTGATATATGGCGCGA-GAAAAAAACGACGATG 594
BSNT_01501___ 553 ATTCTCGTGACTCATGATATAGATGAATCTGTTTATTTAGGAAATGAGCT 602
|||||.||.||.||||||||.||||||||.||.||||||||..||.||||
RBAM_009110__ 595 ATTCTGGTCACGCATGATATTGATGAATCCGTCTATTTAGGCGATAAGCT 644
BSNT_01501___ 603 TGCGATCCTTAAGGCCAAA--CCGG--GGAAAATCCATAAGCTGATGCCC 648
.||||||| |.|||.|||| |||| || .|.||.|..||||||||.
RBAM_009110__ 645 GGCGATCC-TCAGGGCAAAGCCCGGCCGG---CTGCACAGCCTGATGCCG 690
BSNT_01501___ 649 ATTCACCTGGCGTATCCGCGGAACCGGACGACTCCGGATTTCCAAGCGAT 698
|||||.||..||.|||||||.||.||||||.|..|||||||.||.||..|
RBAM_009110__ 691 ATTCAGCTTCCGCATCCGCGCAATCGGACGTCAGCGGATTTTCAGGCCGT 740
BSNT_01501___ 699 CAGACAGAGAGTGCTGTCGGAATTCGAGAAAACAGAAGA-------TTTG 741
|.|.||||..|||||.||.||.||.||||||||.||||| |||
RBAM_009110__ 741 CCGGCAGAAGGTGCTTTCTGAGTTTGAGAAAACGGAAGACCTCCGGTTT- 789
BSNT_01501___ 742 GAGTACGCAGAAGGATCAGGGATATAG 768
||.||.||.||.|||||||||
RBAM_009110__ 790 ------GCGGATGGGTCCGGGATATAG 810
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