Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01442 and RBAM_008780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:09
# Commandline: needle
# -asequence dna-align/BSNT_01442___ygaD.1.9828.seq
# -bsequence dna-align/RBAM_008780___ygaD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01442___ygaD-RBAM_008780___ygaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01442___ygaD-RBAM_008780___ygaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01442___ygaD
# 2: RBAM_008780___ygaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1752
# Identity: 1372/1752 (78.3%)
# Similarity: 1372/1752 (78.3%)
# Gaps: 18/1752 ( 1.0%)
# Score: 5298.5
#
#
#=======================================
BSNT_01442___ 1 GTGGGGGTTATGAAACGCTACATGCAATTCGTCAAACCTTATAAGAAGCA 50
|||||.||.||.|.||||||.||||||||.||.|||||||||||.||.||
RBAM_008780__ 1 GTGGGCGTAATCAGACGCTATATGCAATTTGTAAAACCTTATAAAAAACA 50
BSNT_01442___ 51 AATTTTCGTTACAGTGTTAATCGGGATCGTAAAATTCTCCATTCCGCTTG 100
||||||..|.||||||||||||||.|||.|||||||||||||.|||||.|
RBAM_008780__ 51 AATTTTTATCACAGTGTTAATCGGCATCATAAAATTCTCCATCCCGCTGG 100
BSNT_01442___ 101 CTCTCCCATTGCTTCTG---AAGTACGTAGTTGACGACATTATTCAAGGA 147
||||||| ||||||| ||.|||||.||.||.||||||||||||||.
RBAM_008780__ 101 CTCTCCC---GCTTCTGTTAAAATACGTGGTCGATGACATTATTCAAGGG 147
BSNT_01442___ 148 GGCGGCACGGCCAGTGACAAAACCACGTCATTGTTCACGATTATGGCGAT 197
.||||.|||||.||.|..|||||..|.||..|.||||||||.||||..||
RBAM_008780__ 148 AGCGGAACGGCAAGCGCTAAAACATCATCGCTATTCACGATAATGGGCAT 197
BSNT_01442___ 198 CATGTTCGCCTTATTTTTAATTTTGCGCCCGCCTGTTGAATATTACCGGC 247
||||||||...|.|||||||||.||||.||.||.||.||.||.||.||||
RBAM_008780__ 198 CATGTTCGTGCTGTTTTTAATTCTGCGTCCCCCGGTAGAGTACTATCGGC 247
BSNT_01442___ 248 AATATTTTGCCCAGTGGACTGCCAGCAAGGTGCTTTATGATATAA---GA 294
||||.||.||.||.|||||.|.||||..||||||.||||||||.| ||
RBAM_008780__ 248 AATACTTCGCGCAATGGACGGGCAGCCGGGTGCTCTATGATATCAGGGGA 297
BSNT_01442___ 295 GCTAAGCTGTTTGACCATATACAAAAACTGAGCCTACGTTTTTACGCGAA 344
| || .|||||||||||||.||||||.|||||||..|.|||||.||.||
RBAM_008780__ 298 G-TA--TTGTTTGACCATATTCAAAAATTGAGCCTGAGGTTTTATGCCAA 344
BSNT_01442___ 345 TACAAGAACAGGGGAAGTCATTTCCCGAGTGATTAATGATGTAGAACAAA 394
.||.|||||.||.||||||||||||||.|||||.||||||||.|||||.|
RBAM_008780__ 345 CACGAGAACGGGCGAAGTCATTTCCCGGGTGATAAATGATGTCGAACAGA 394
BSNT_01442___ 395 CAAAGGATTTCGTCATCACAGGGCTTATGAATATATGGCTCGATATGCTG 444
||||.||.||.|||||.||.||.||.||||||||.|||||.||||||.||
RBAM_008780__ 395 CAAAAGACTTTGTCATAACGGGACTGATGAATATCTGGCTTGATATGATG 444
BSNT_01442___ 445 ACGATTTTGATTGTAATCTCGATCATGCTCACACTGGACGTTAAATTAAC 494
|||.|..||||.||.||||..||.|||.|.|||||.||.|||||..|.||
RBAM_008780__ 445 ACGGTGCTGATCGTCATCTGCATTATGTTTACACTCGATGTTAAGCTGAC 494
BSNT_01442___ 495 GCTGATCTCTATCGTTTTATTCCCATTATACGGAATATCAGTGAAGTATT 544
..||||.|||.||.||||.||.||.|||||||||||.||||||||.||.|
RBAM_008780__ 495 ATTGATATCTGTCATTTTGTTTCCGTTATACGGAATTTCAGTGAAATACT 544
BSNT_01442___ 545 TTTACGGCCGTTTACGAAAGCTGACAAGGGAGCGCTCACAGGCTCTTGCT 594
||||||||||..|.|||||.||||||.|.|||||.||.|||||.||.||.
RBAM_008780__ 545 TTTACGGCCGCCTCCGAAAACTGACACGTGAGCGTTCTCAGGCACTCGCC 594
BSNT_01442___ 595 CAAGTGCAGGGGCATTTGCACGAACGCATTCAAGGCATGCCTGTCATCAG 644
|||||.|||||.||||||||||||.|..||||.||.|||||.||||||||
RBAM_008780__ 595 CAAGTTCAGGGACATTTGCACGAAAGAGTTCAGGGGATGCCCGTCATCAG 644
BSNT_01442___ 645 AAGCTTTGCGATAGAAGATCATGAACAGGCTCAA-TTTAATGAGAAAAAC 693
|||.|||||.||.||||||.|||||||.|| ||| |||.||||.||||||
RBAM_008780__ 645 AAGTTTTGCCATTGAAGATTATGAACAAGC-CAATTTTGATGAAAAAAAC 693
BSNT_01442___ 694 GGGCATTTCTTAGATAAAGCCATCCGCCACACGAATTGGAACGCCAAAAC 743
||.|||||..|.||.|.|||.|||||.||.||||||||||||||.|||||
RBAM_008780__ 694 GGACATTTTCTGGACAGAGCGATCCGTCATACGAATTGGAACGCAAAAAC 743
BSNT_01442___ 744 CTTTGCGGTCGTTAATACCATTACAGATTTGGCGCCGCTCATCGTCATAG 793
.|||||.|||||.|||||||||||.||||||||||||||..|.||.||.|
RBAM_008780__ 744 GTTTGCAGTCGTGAATACCATTACGGATTTGGCGCCGCTGCTTGTTATCG 793
BSNT_01442___ 794 CGTGCGCCGGGTATTTTGTCATTAATGGACCGCTGACAGTCGGAACAATG 843
|||..||.||.|||||||||||.||.||.||||||||.||.||.||.|||
RBAM_008780__ 794 CGTTTGCGGGTTATTTTGTCATAAACGGTCCGCTGACGGTAGGGACGATG 843
BSNT_01442___ 844 GTCGCGTTTGTCGGATATATTGACAGAATGTACAACCCTGTTAGAAGGCT 893
||.|||||.|||||.||||||||||||||||||||.||.||.|||||..|
RBAM_008780__ 844 GTTGCGTTCGTCGGCTATATTGACAGAATGTACAATCCGGTCAGAAGATT 893
BSNT_01442___ 894 GATCAATTCCTCTACAACATTGACACAGTCAATCGCATCAATGGACAGGG 943
||||||.||.||.||.||..||||.|||||.|||||.|||||||||.|..
RBAM_008780__ 894 GATCAACTCATCGACGACGCTGACCCAGTCGATCGCTTCAATGGACCGCA 943
BSNT_01442___ 944 TGTTTGAATTTATTGACGAGCCCTATGAACTCACTGACAAACCAAATGCG 993
|.|||||||||||.||||||||.||||||||.|||||.|||||.|||||.
RBAM_008780__ 944 TATTTGAATTTATCGACGAGCCGTATGAACTGACTGATAAACCGAATGCA 993
BSNT_01442___ 994 ATAAAGGCCGATCAG-ATTCGCGGAGGAGTGGAGTTTCAAAACGTTTCGT 1042
.||||.||.|| |.| |||...||.|.|||.||.||.|.|||.||.||||
RBAM_008780__ 994 GTAAAAGCTGA-CGGCATTAAGGGCGAAGTTGAATTCCGAAATGTCTCGT 1042
BSNT_01442___ 1043 TTCAATATGA-GAAGGACAAAGAAAATATTCTTCATGATGTATCCTTAAA 1091
|.|..||||| |||||| |||||||..|||.|.||.||.||.||||||||
RBAM_008780__ 1043 TCCGTTATGAGGAAGGA-AAAGAAACGATTTTGCAGGACGTTTCCTTAAA 1091
BSNT_01442___ 1092 AGTAAATAGAGGAGAAACTGTAGCTCTCGTCGGCATGAGCGGAGGAGGAA 1141
.||.|..|.|||.|||||.||.||.||||||||.||||||||.||.||.|
RBAM_008780__ 1092 GGTGACAAAAGGGGAAACCGTCGCGCTCGTCGGGATGAGCGGCGGCGGTA 1141
BSNT_01442___ 1142 AATCAACGCTCGTCAGCCTGATCCCAAGATTTTATGATGTAACAAGCGGC 1191
||||.|||||.||||||||.||.||..|.||||||||||||.|..|||||
RBAM_008780__ 1142 AATCGACGCTTGTCAGCCTCATACCGCGTTTTTATGATGTATCCGGCGGC 1191
BSNT_01442___ 1192 AGACTGCTGATTGATGGGACGGATATTCGCGATTATGAAGCAAGAAGCCT 1241
||.|||||||||||.||.||.||||||||||||||||||||.||||||||
RBAM_008780__ 1192 AGCCTGCTGATTGACGGCACAGATATTCGCGATTATGAAGCGAGAAGCCT 1241
BSNT_01442___ 1242 TCGCAACCAGGTTGGTATGGTGCTTCAGGATACCTTTTTATTTAGTGAAA 1291
.|||||.||.||.||.|||||||||||||||||.|||.|.||.|||||.|
RBAM_008780__ 1242 CCGCAATCAAGTCGGAATGGTGCTTCAGGATACGTTTCTGTTCAGTGAGA 1291
BSNT_01442___ 1292 CGATTCGGGAAAATATCGCGATCGGCAAGCCTGATGCCACCCTTGAAGAG 1341
|||||||.|||||||||||.|||||.||.||.|..||..|..|.||.|||
RBAM_008780__ 1292 CGATTCGTGAAAATATCGCCATCGGTAAACCGGGAGCGTCTTTGGATGAG 1341
BSNT_01442___ 1342 ATAATCGAAGCCGCCAAAGCTGCAAATGCCCATGAATTTATCATGAGTTT 1391
.|..|.|..||.||.|||||.||||||||||||||||||||.||||.|||
RBAM_008780__ 1342 GTGGTTGCGGCTGCGAAAGCGGCAAATGCCCATGAATTTATTATGAATTT 1391
BSNT_01442___ 1392 TCCAGAAGGATATGAGACCCGGGTGGGAGAACGAGGCGTTAAGCTTTCAG 1441
.||.|||||.|||||.|||...||.||.|||||.|||||.||..|.||||
RBAM_008780__ 1392 CCCCGAAGGTTATGAAACCAAAGTCGGCGAACGGGGCGTCAAATTGTCAG 1441
BSNT_01442___ 1442 GCGGACAAAAGCAGCGGATCTCAATTGCGCGGGTATTCCTGAAAAATCCG 1491
||||.||.||.||||||||.||.||.|||||.||||||.|.|||||||||
RBAM_008780__ 1442 GCGGGCAGAAACAGCGGATTTCCATCGCGCGTGTATTCTTAAAAAATCCG 1491
BSNT_01442___ 1492 CCGCTCCTCATTTTAGATGAAGCTACATCAGCTCTGGATTTGGAAAGTGA 1541
|||||..|.||.||.||||||||.|||||.|||||.|||.|.||||||||
RBAM_008780__ 1492 CCGCTGTTAATCTTGGATGAAGCGACATCGGCTCTTGATCTTGAAAGTGA 1541
BSNT_01442___ 1542 GCATTACATTCAAGAAGCGATGGACAAACTGGCGAAGGATAGAACAACTT 1591
.||.||||||||.|||||.|||||.||.||.|||||..|..|.||.||||
RBAM_008780__ 1542 ACACTACATTCAGGAAGCAATGGAAAAGCTTGCGAAAAACCGGACGACTT 1591
BSNT_01442___ 1592 TTGTTGTCGCCCACCGTTTATCGACAATCACCCATGCGGATAAGATTGTT 1641
||.|.|||||||||.|..|.||.||.||.||.||.||||||||.|||||.
RBAM_008780__ 1592 TTATCGTCGCCCACAGGCTGTCCACGATTACGCACGCGGATAAAATTGTC 1641
BSNT_01442___ 1642 GTCATGGAAAACGGCACAATCATTGAAATCGGAACCCATGATGAACTCAT 1691
|||||||||||||||.|.|||.|.||||.|||.||.||.||.|||.|.||
RBAM_008780__ 1642 GTCATGGAAAACGGCGCCATCGTCGAAACCGGCACGCACGAGGAATTAAT 1691
BSNT_01442___ 1692 GGACTATGAGAGCCAGTACAAGCATTTATTTACCATTCAAAATTTGAACT 1741
||.|.|.|...|||||||||..||.||||||||.|||||.||||||||||
RBAM_008780__ 1692 GGCCCAAGGCGGCCAGTACAGACACTTATTTACGATTCAGAATTTGAACT 1741
BSNT_01442___ 1742 AA 1743
.|
RBAM_008780__ 1742 GA 1743
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