Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01437 and RBAM_008750

See Amino acid alignment / Visit BSNT_01437 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:09
# Commandline: needle
#    -asequence dna-align/BSNT_01437___sspE.1.9828.seq
#    -bsequence dna-align/RBAM_008750___sspE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01437___sspE-RBAM_008750___sspE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01437___sspE-RBAM_008750___sspE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01437___sspE
# 2: RBAM_008750___sspE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 256
# Identity:     150/256 (58.6%)
# Similarity:   150/256 (58.6%)
# Gaps:          86/256 (33.6%)
# Score: 598.5
# 
#
#=======================================

BSNT_01437___      1 ATGGCTAACTC-AAATAACTTCAGCAAAACAAACGCTCAACAAGTTAGAA     49
                     |||||.||||| |||||    ||||||||||.|||.|||.||.||.|.||
RBAM_008750__      1 ATGGCAAACTCAAAATA----CAGCAAAACAGACGTTCAGCAGGTGAAAA     46

BSNT_01437___     50 AACAAAACCAACAATCAGCTGCTGGTCAAGGTCAATTTGGCACTGAATTT     99
                     .|||||||||.|||||||||.|.|||                        
RBAM_008750__     47 GACAAAACCAGCAATCAGCTTCCGGT------------------------     72

BSNT_01437___    100 GCTAGCGAAACAAACGCTCAGCAAGTCAGAAAACAAAACCAGCAATCAGC    149
                                                                       
RBAM_008750__     72 --------------------------------------------------     72

BSNT_01437___    150 TGGACAACAAGGTCAATTCGGCACTGAATTCGCTAGTGAAACTGACGCAC    199
                            ||.|||||||.||||||||||||||..|||||||||||.||.|
RBAM_008750__     73 -------CAGGGTCAATACGGCACTGAATTCGGCAGTGAAACTGATGCGC    115

BSNT_01437___    200 AGCAGGTAAGACAGCAAAACCAATCTGCTGAACAAAACAAACAACAAAAC    249
                     |||||||.|||.|||||||||||||||||||||||||||||||.||||||
RBAM_008750__    116 AGCAGGTTAGAAAGCAAAACCAATCTGCTGAACAAAACAAACAGCAAAAC    165

BSNT_01437___    250 AGCTAA    255
                     ||||||
RBAM_008750__    166 AGCTAA    171


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