Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01432 and RBAM_008700

See Amino acid alignment / Visit BSNT_01432 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:08
# Commandline: needle
#    -asequence dna-align/BSNT_01432___yfhO.1.9828.seq
#    -bsequence dna-align/RBAM_008700___fhO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01432___yfhO-RBAM_008700___fhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01432___yfhO-RBAM_008700___fhO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01432___yfhO
# 2: RBAM_008700___fhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2754
# Identity:    1814/2754 (65.9%)
# Similarity:  1814/2754 (65.9%)
# Gaps:         336/2754 (12.2%)
# Score: 5632.5
# 
#
#=======================================

BSNT_01432___      1 ATGAAAAGAAAACATATCATGATCTAT----GCGGCCAGTTTGCTGGTGT     46
                     ||||||| ||||||.||  .||||| |    ||.|||.||.||||||   
RBAM_008700__      1 ATGAAAA-AAAACAAAT--GGATCT-TGCCGGCAGCCTGTGTGCTGG---     43

BSNT_01432___     47 CCGTTCT--GGCACACGC------TTTTTTTGTGAAAGAATGGGCGGAAG     88
                          ||  ||||..|||      ||||||..|.|||||.|||.|||.||
RBAM_008700__     44 -----CTGCGGCAGCCGCTCATATTTTTTTCTTAAAAGAGTGGTCGGCAG     88

BSNT_01432___     89 GCAGGTATATGACAGGTCCGGGTGACGGGCTTGCGCAAATGATCGTATTT    138
                     .|.|.||||||||.||..|.||.||||||.|.||.||||||...||.||.
RBAM_008700__     89 ACCGCTATATGACGGGGTCTGGAGACGGGATCGCCCAAATGGCGGTCTTC    138

BSNT_01432___    139 AAAAAATTATTATTTGACCAATATACACACGGGAATTTTTTCTACAATTA    188
                     |||||..|..|.|||||.|||||||...||||.|...|.||.||||..||
RBAM_008700__    139 AAAAAGCTGCTGTTTGATCAATATATGAACGGCAGGCTGTTTTACAGCTA    188

BSNT_01432___    189 TTCATTCGGACTTGGCGGCGGCACATTCAGTCAGCTCGGCTATTATTTTT    238
                     |||.||||||||.|||||.|||...|.|||||||||||||||||||||.|
RBAM_008700__    189 TTCGTTCGGACTGGGCGGGGGCGTGTACAGTCAGCTCGGCTATTATTTCT    238

BSNT_01432___    239 CTGCGTCTTTTCTTTTTCTTGCTGTATCCGCCGCTG-------TTTGGAT    281
                     ||.|.||||||||.||.||...|.|.||||||||||       ||||.| 
RBAM_008700__    239 CTACTTCTTTTCTATTCCTGTTTATCTCCGCCGCTGTCCGCTTTTTGCA-    287

BSNT_01432___    282 GCTTCAAGCCGTCCAGCTGATCGGAGAAGCGGATACGCTTTTTTGGGCTG    331
                     ||||      .|.|||||||..||.||.||.|||.||||.||||||||..
RBAM_008700__    288 GCTT------ATTCAGCTGACGGGTGAGGCTGATGCGCTGTTTTGGGCGC    331

BSNT_01432___    332 AGTCAGCTGTTTTTATCAGTATTTTTAAATTGAGCTTGATCATCTTTACG    381
                     ||.|..|.|||||||||||..||...||...|||.||.|||||.||.|||
RBAM_008700__    332 AGGCCTCCGTTTTTATCAGCTTTGCCAAGCAGAGTTTTATCATATTCACG    381

BSNT_01432___    382 TCCGCTTCTGTTTTTCATTATCTTATTAAGCACAGGGCGGCATCGTTCAC    431
                     .|.||.|.|||.||.|.||||.|..|.||.|..|.||.|.|..|.||..|
RBAM_008700__    382 GCGGCGTGTGTGTTCCGTTATTTCGTCAAACGGACGGTGCCTGCTTTTGC    431

BSNT_01432___    432 GGGAGCCGTGTTATACGGCGTCTCAATTATTTATTTCCGTCACGAAGCGT    481
                     |||.||||||||.|||||.|||||.||||||||.|||||.||.||.|..|
RBAM_008700__    432 GGGCGCCGTGTTGTACGGGGTCTCGATTATTTACTTCCGGCATGAGGTAT    481

BSNT_01432___    482 ATTGGGAATTTTTCACCGATACAATGGTTTGGCTTCCGCTGCTTGTGCTT    531
                     |||||||.||||||||.||.|..|||||.|||||.|||.||||||||.|.
RBAM_008700__    482 ATTGGGACTTTTTCACTGACAGTATGGTGTGGCTGCCGTTGCTTGTGTTG    531

BSNT_01432___    532 GGCGCAGAAAAAATTATTAG------AGAGCGGCGTCCGGCGTGGTTTAT    575
                     |||||.||||||||.||.||      |.||      ||||||||||||||
RBAM_008700__    532 GGCGCGGAAAAAATCATCAGGGAAAAAAAG------CCGGCGTGGTTTAT    575

BSNT_01432___    576 CGTTGCGTGTTCGCTGACGTTAATCAACAATTTTTACTTTGCATACATAA    625
                     |.|.||.|||.|||||||.||.||||||||.|||||.|||||.||.||.|
RBAM_008700__    576 CTTCGCCTGTGCGCTGACATTGATCAACAACTTTTATTTTGCGTATATTA    625

BSNT_01432___    626 ACCTTATATTCATCGGAATCTATGTGCTGTTCAGATGGCTGATTAGTTTG    675
                     |.||.||.||||||||.||.|||.|..|.|||||.|||.||||       
RBAM_008700__    626 ATCTGATTTTCATCGGCATTTATATCTTATTCAGGTGGGTGAT-------    668

BSNT_01432___    676 GAACCACATGAAG---------AGAAAAGATGGATTCAAATCAGATTATT    716
                       .||.|.|||||         .||||||....|.||||..|||..||||
RBAM_008700__    669 --CCCCCTTGAAGGCAATGAGACGAAAAGGCTCACTCAATGCAGGATATT    716

BSNT_01432___    717 TCTCGTTTCAGGCTTCATTTCT-------TTTGGCATCAGTGCGGCGGCG    759
                     |.|..|.||.||       |||       ||.|||||.||.||.|...|.
RBAM_008700__    717 TATTCTGTCGGG-------TCTGCTCGGGTTCGGCATAAGCGCAGTTTCC    759

BSNT_01432___    760 TTTGTGCCGGTAGTATACGGTTTTTTAAACAACCTGCGCCCTCC--ATAC    807
                     |||.|.||.||.||||||||.|...|..|.||.|||||.||.||  ||.|
RBAM_008700__    760 TTTATTCCTGTCGTATACGGATACCTTCATAATCTGCGGCCGCCGTATTC    809

BSNT_01432___    808 AGCCAGAAAATAGAGTGGCTCAATTTCGATGATAATATCTTATTTTCGAG    857
                     ||  ||.|.||.|..|||||..||||....||.||.||.||||||||.||
RBAM_008700__    810 AG--AGCATATTGCTTGGCTTGATTTTTCCGACAACATTTTATTTTCTAG    857

BSNT_01432___    858 CCGGATCATCATTGTGCCGGCCGCTTTTCTGCTGTTTTTGTTTATGATTT    907
                     ||||||.|||||..|||||||.||||||.||||.|||.|.|||| .||||
RBAM_008700__    858 CCGGATAATCATCCTGCCGGCGGCTTTTTTGCTTTTTCTATTTA-CATTT    906

BSNT_01432___    908 -CTTTTTACAAAAACCGTGTGTTTCGTCTCTTTGCCGGGTTGAGCCTGCT    956
                      ||||.|||||||||||..||||.||.||.|||||.||..|.||.|||||
RBAM_008700__    907 ACTTTATACAAAAACCGCTTGTTCCGGCTGTTTGCGGGAATCAGTCTGCT    956

BSNT_01432___    957 GTTTATTCTGTTTCATTTCAGTCCGTATGCGGCAAGCGTCTTTAACGGTT   1006
                     ||.||||||||||||.||||||||||..||||||||.|.|||||||||||
RBAM_008700__    957 GTATATTCTGTTTCACTTCAGTCCGTTCGCGGCAAGTGCCTTTAACGGTT   1006

BSNT_01432___   1007 TTTCCGCCCCGCAAAACCGGTTTGAATATATTCTGGCCTTTACCATTGCG   1056
                     ||||.||.|||||.|||.||||||||||..|.|||..|||.||.|||||.
RBAM_008700__   1007 TTTCAGCTCCGCAGAACAGGTTTGAATACGTCCTGTGCTTCACGATTGCC   1056

BSNT_01432___   1057 GGAGCAGCTGC-GGCTGGTTTGTCACAGCTGTCTGA-AT-----TGAAAC   1099
                     |||.|.|.|.| |.|.||.|| ||..||||.||.|| ||     ||||..
RBAM_008700__   1057 GGAACGGTTTCAGTCGGGCTT-TCTAAGCTTTCAGACATCAGCATGAAGA   1105

BSNT_01432___   1100 GGAAAGAACTGCTCCCGGCCGCAGCTGTCGTCCTGCTTCTTTACTTGTAT   1149
                     |.|      ||||...|.||||.|...|||||.|.||.||.|| |||.|.
RBAM_008700__   1106 GTA------TGCTGATGTCCGCCGTACTCGTCGTTCTGCTCTA-TTGGAG   1148

BSNT_01432___   1150 CATATTCAAAGGTATAAGCTCGATA---TATGGAAGCCTGCGAATGAAAG   1196
                     |       .|||  |.|| .||.||   |.||||                
RBAM_008700__   1149 C-------CAGG--TGAG-GCGGTACAGTCTGGA----------------   1172

BSNT_01432___   1197 TATTCTATTGCTCTTACTCATGACAATC------GCAGCCTTGTT----T   1236
                          ||||  |||.| |||.|.|||.|      .||.||||.||    |
RBAM_008700__   1173 -----TATT--TCTGA-TCACGCCAACCTGCCCGTCATCCTTCTTCTGGT   1214

BSNT_01432___   1237 GCT-------GCAGCT---TTTGC------GAAAAAACGGGCAAAAATG-   1269
                     |||       ||.|||   |||||      ||.||.||.|    |||.| 
RBAM_008700__   1215 GCTGAGCATAGCCGCTTTCTTTGCAGCAAAGACAAGACTG----AAAGGC   1260

BSNT_01432___   1270 GCTGTGTACG--GTATA----ATCATTCTTTCTT--CGCTGT--TTGTCG   1309
                     ||.|||..||  ||.||    .||||| ||.|||  .|||||  ||...|
RBAM_008700__   1261 GCGGTGCCCGCCGTCTATGCTGTCATT-TTGCTTACGGCTGTGCTTACGG   1309

BSNT_01432___   1310 CCAACTCCTATCAAAAATACGCGCTCTCAGAAGGCGG--CGATTTGGATA   1357
                     |.||..|.|||.|||||||.||..|.|||||||||||  .|||||  |||
RBAM_008700__   1310 CTAATACATATGAAAAATATGCTTTATCAGAAGGCGGGAAGATTT--ATA   1357

BSNT_01432___   1358 GTGTGACAAAAGAATATCTT----ACAAGTGAGGAATACAGAGGGCGGGA   1403
                     ..||    |..|.|||.|||    ||..|||..||.||.|.|||....||
RBAM_008700__   1358 CGGT----ATCGCATACCTTTATGACGGGTGCTGACTATAAAGGCAAAGA   1403

BSNT_01432___   1404 ATCATCTGAGCTCA-TCAGACGT-TTACAGAAGGAAGACGATGATCCGCT   1451
                     |..|||.||||||| |||| ||| |.|.|||| .|||||..|||||||.|
RBAM_008700__   1404 ACAATCGGAGCTCATTCAG-CGTCTGAAAGAA-AAAGACCCTGATCCGTT   1451

BSNT_01432___   1452 CATG--AGAATCGATTGGATGAACGGGGTCCGCAATAATACGCCAATCAT   1499
                       ||  .|..|.||||||||||||||.||...||||||.||.||.|||||
RBAM_008700__   1452 --TGCCCGTTTAGATTGGATGAACGGTGTTTTCAATAACACCCCGATCAT   1499

BSNT_01432___   1500 TTACGGATTTAATGGCTTCAGCGCGTATTCCAGCATTTTAAACAAAGATC   1549
                     .|||||.||.||.||.|||||||..||.||.|||||..|.|||....|||
RBAM_008700__   1500 ATACGGGTTCAACGGATTCAGCGTATACTCAAGCATACTGAACCGCAATC   1549

BSNT_01432___   1550 TGCTGGCCTTCTATTGGAATGA-TTTAAGCATCGATATGGGCAGGGAAAG   1598
                     |||||.||||.||.|||.|.|| .|..|| ||.||.||||||||.|||||
RBAM_008700__   1550 TGCTGTCCTTTTACTGGCACGACCTCCAG-ATTGACATGGGCAGAGAAAG   1598

BSNT_01432___   1599 CGTCAGCCGTTACGCGTCATTGGGAGACAGGGCGAATTTATACAGCCTGC   1648
                     |||||||||.||.|||.||||.|||.|||||||.||||||||||||||||
RBAM_008700__   1599 CGTCAGCCGCTATGCGACATTAGGAAACAGGGCTAATTTATACAGCCTGC   1648

BSNT_01432___   1649 TTTACGGCAAATATTATATGACCGAAAAAACAAACGAAGCCAGCGTCCCG   1698
                     |||||||.||||||||||||||.||||||||||||||.|||.||||.|||
RBAM_008700__   1649 TTTACGGAAAATATTATATGACGGAAAAAACAAACGAGGCCGGCGTGCCG   1698

BSNT_01432___   1699 TACGGCTTCAAAAAGCATT--TAGAAACAGAGCATTATGCAGTTTATGAG   1746
                     |||||.||||||||  |.|  |.|||.||...||||||||.||||||.|.
RBAM_008700__   1699 TACGGGTTCAAAAA--AATCATGGAATCAACCCATTATGCGGTTTATCAA   1746

BSNT_01432___   1747 AATCAGTACATGCTTCCATTCGTTAAAACAGCGGATGCCATATACAGCGA   1796
                     |||||.||.||||||||.|||||....|||||.|||..|.||||.|.|||
RBAM_008700__   1747 AATCAATATATGCTTCCGTTCGTACGGACAGCCGATCGCGTATATAACGA   1796

BSNT_01432___   1797 AAGTGAGCTGGACCGATTGCCCGCTCTTGCGAAAGAACAGGCGATGCT--   1844
                     ..|.|..|||.|...|..||||||.|||||.|..||||.|||.|||||  
RBAM_008700__   1797 GGGCGGCCTGAAAAAAGCGCCCGCCCTTGCCAGGGAACGGGCAATGCTTG   1846

BSNT_01432___   1845 ----GA-----AAGGAATCATATTAAAAGATCCATCAGGAAAAACGGAGC   1885
                         ||     |.|||||||    |..|.|.|||.||.||||||.|...|
RBAM_008700__   1847 ACGGGATCGTCATGGAATCA----AGCACAACCAACACGAAAAAAGCGCC   1892

BSNT_01432___   1886 AGACACCAAAACAGTCCAATTTGATCACCAAGTCGGACA----TTACCGC   1931
                     .||..|.|||       |||.|||||    .|.||.|||    |..|.||
RBAM_008700__   1893 TGAGGCGAAA-------AATATGATC----CGCCGTACAGAGGTAGCGGC   1931

BSNT_01432___   1932 AAAACAAGCCCAGTATCAAAACGGGCTGCTAACCGTAACTGGA-GAAAAC   1980
                     ..||||.|.|.|.|||||.|||||..|.||.||.||||    | |||.||
RBAM_008700__   1932 CGAACATGGCGATTATCATAACGGCATCCTGACGGTAA----ACGAAGAC   1977

BSNT_01432___   1981 GGAGGAGAGCTGATCATCACCCCG-AAACAGCCATCAT---CCGCTCCGG   2026
                     ||.||.|..|||.||||.||.||| ||.|.||.|..||   |.||    |
RBAM_008700__   1978 GGCGGCGGCCTGGTCATTACGCCGCAAGCCGCTAAGATGGACAGC----G   2023

BSNT_01432___   2027 GAGACTACTATGTCAGCTTTTATTTGAAAAGCAAAGCAAAAGA-CAGAGG   2075
                     |.||.||.||.|||||||||||||||||.|..|||||.||.|| ||| ||
RBAM_008700__   2024 GCGATTATTACGTCAGCTTTTATTTGAAGAATAAAGCGAAGGACCAG-GG   2072

BSNT_01432___   2076 ATTTGCGTTAAAGGTAAATGATTATGTCACAACAAGGAAATCGAACAAAT   2125
                     .|||.|.|||||.||.||.|||||....|||||.||.||||||||..|||
RBAM_008700__   2073 CTTTACATTAAAAGTGAACGATTACACGACAACGAGAAAATCGAATCAAT   2122

BSNT_01432___   2126 CGATATATAAAACCGGAGTAAATAATATAACGGTAAGAGTGCCTAAATCA   2175
                     |.||.||.|||||.||.||.||..||.|.||.||.||||||||.|||.||
RBAM_008700__   2123 CCATTTACAAAACAGGTGTCAACGATGTTACTGTCAGAGTGCCGAAAACA   2172

BSNT_01432___   2176 GGCCATATCTCAATCAATCTTCCGAAAGGAACCTATGAGC-TGAGAAACA   2224
                     ....|.|||..||||..|||.||||||||..|.|||.||| |||.|.|| 
RBAM_008700__   2173 AAAAACATCCAAATCCGTCTGCCGAAAGGGTCGTATCAGCTTGACAGAC-   2221

BSNT_01432___   2225 TAGCGCTCTATGAAGAAAATTACCAAACGCTGAAAAACGCTGTAATGCAA   2274
                     |.|||||.|||||||||...|||.|.||||||||||.|||    ||.|..
RBAM_008700__   2222 TGGCGCTTTATGAAGAACGGTACGATACGCTGAAAAGCGC----ATACCG   2267

BSNT_01432___   2275 AATAAAACAGAGAAAGCA------GACAAACTGAATTGGAACAAAAATCG   2318
                     |  |||.|.||.||||.|      |.|.|.||.|..|||..|..||||  
RBAM_008700__   2268 A--AAAGCGGAAAAAGAACCGCGGGCCGATCTCAGCTGGCGCGGAAAT--   2313

BSNT_01432___   2319 ACTGAC-CTTTGCCTATCATCTGT-------CAAAA-----GACCAGTAC   2355
                         || |||  |.|||| || ||       |||||     |..|.|||.
RBAM_008700__   2314 ----ACGCTT--CATATC-TC-GTATGAAAACAAAACCCGCGCGCCGTAT   2355

BSNT_01432___   2356 ATCATGCTTCCGATCCCATATGAAAAAGGCTGGGAGCTGAAGATCAACGG   2405
                     ||||||||||||||.|||||||||||||||||||||||||||||.|||||
RBAM_008700__   2356 ATCATGCTTCCGATTCCATATGAAAAAGGCTGGGAGCTGAAGATAAACGG   2405

BSNT_01432___   2406 AAAAACA-CAGAAGATCGAAAAAGCGGATTATGCTTTTATAGGCTTCAAG   2454
                      .|.||| .||.||||.|||||||||||||||.|.||.||.||.||.||.
RBAM_008700__   2406 -CAGACAGGAGCAGATTGAAAAAGCGGATTATTCCTTCATCGGATTTAAA   2454

BSNT_01432___   2455 GCGCAAAAGGGAGACAATCACATTGAGCTGACTTACTATCCGCCATACTT   2504
                     ||||||||.|||.|.||..|.|||.|..|.||.||.||.|||||.|..||
RBAM_008700__   2455 GCGCAAAAAGGAAAAAACGATATTCAATTAACGTATTACCCGCCGTTTTT   2504

BSNT_01432___   2505 CAAA------------ATATCGGCGATCATATCTCTCGTCAGTCTGCTGC   2542
                     .|||            .||||||.|||||                   ||
RBAM_008700__   2505 TAAACCCGCGGCCGCTCTATCGGTGATCA-------------------GC   2535

BSNT_01432___   2543 TTGCTGTTTTC-----TATAT-----AAGACGTAAAAAGCCCGGCTCTAT   2582
                     .|..|||||||     |||||     |||||..|||||||||||||||..
RBAM_008700__   2536 CTCGTGTTTTCGGCTATATATGTGAGAAGACAAAAAAAGCCCGGCTCTTA   2585

BSNT_01432___   2583 ATAG   2586
                     |   
RBAM_008700__   2586 A---   2586


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