Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01432 and RBAM_008700
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:08
# Commandline: needle
# -asequence dna-align/BSNT_01432___yfhO.1.9828.seq
# -bsequence dna-align/RBAM_008700___fhO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01432___yfhO-RBAM_008700___fhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01432___yfhO-RBAM_008700___fhO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01432___yfhO
# 2: RBAM_008700___fhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2754
# Identity: 1814/2754 (65.9%)
# Similarity: 1814/2754 (65.9%)
# Gaps: 336/2754 (12.2%)
# Score: 5632.5
#
#
#=======================================
BSNT_01432___ 1 ATGAAAAGAAAACATATCATGATCTAT----GCGGCCAGTTTGCTGGTGT 46
||||||| ||||||.|| .||||| | ||.|||.||.||||||
RBAM_008700__ 1 ATGAAAA-AAAACAAAT--GGATCT-TGCCGGCAGCCTGTGTGCTGG--- 43
BSNT_01432___ 47 CCGTTCT--GGCACACGC------TTTTTTTGTGAAAGAATGGGCGGAAG 88
|| ||||..||| ||||||..|.|||||.|||.|||.||
RBAM_008700__ 44 -----CTGCGGCAGCCGCTCATATTTTTTTCTTAAAAGAGTGGTCGGCAG 88
BSNT_01432___ 89 GCAGGTATATGACAGGTCCGGGTGACGGGCTTGCGCAAATGATCGTATTT 138
.|.|.||||||||.||..|.||.||||||.|.||.||||||...||.||.
RBAM_008700__ 89 ACCGCTATATGACGGGGTCTGGAGACGGGATCGCCCAAATGGCGGTCTTC 138
BSNT_01432___ 139 AAAAAATTATTATTTGACCAATATACACACGGGAATTTTTTCTACAATTA 188
|||||..|..|.|||||.|||||||...||||.|...|.||.||||..||
RBAM_008700__ 139 AAAAAGCTGCTGTTTGATCAATATATGAACGGCAGGCTGTTTTACAGCTA 188
BSNT_01432___ 189 TTCATTCGGACTTGGCGGCGGCACATTCAGTCAGCTCGGCTATTATTTTT 238
|||.||||||||.|||||.|||...|.|||||||||||||||||||||.|
RBAM_008700__ 189 TTCGTTCGGACTGGGCGGGGGCGTGTACAGTCAGCTCGGCTATTATTTCT 238
BSNT_01432___ 239 CTGCGTCTTTTCTTTTTCTTGCTGTATCCGCCGCTG-------TTTGGAT 281
||.|.||||||||.||.||...|.|.|||||||||| ||||.|
RBAM_008700__ 239 CTACTTCTTTTCTATTCCTGTTTATCTCCGCCGCTGTCCGCTTTTTGCA- 287
BSNT_01432___ 282 GCTTCAAGCCGTCCAGCTGATCGGAGAAGCGGATACGCTTTTTTGGGCTG 331
|||| .|.|||||||..||.||.||.|||.||||.||||||||..
RBAM_008700__ 288 GCTT------ATTCAGCTGACGGGTGAGGCTGATGCGCTGTTTTGGGCGC 331
BSNT_01432___ 332 AGTCAGCTGTTTTTATCAGTATTTTTAAATTGAGCTTGATCATCTTTACG 381
||.|..|.|||||||||||..||...||...|||.||.|||||.||.|||
RBAM_008700__ 332 AGGCCTCCGTTTTTATCAGCTTTGCCAAGCAGAGTTTTATCATATTCACG 381
BSNT_01432___ 382 TCCGCTTCTGTTTTTCATTATCTTATTAAGCACAGGGCGGCATCGTTCAC 431
.|.||.|.|||.||.|.||||.|..|.||.|..|.||.|.|..|.||..|
RBAM_008700__ 382 GCGGCGTGTGTGTTCCGTTATTTCGTCAAACGGACGGTGCCTGCTTTTGC 431
BSNT_01432___ 432 GGGAGCCGTGTTATACGGCGTCTCAATTATTTATTTCCGTCACGAAGCGT 481
|||.||||||||.|||||.|||||.||||||||.|||||.||.||.|..|
RBAM_008700__ 432 GGGCGCCGTGTTGTACGGGGTCTCGATTATTTACTTCCGGCATGAGGTAT 481
BSNT_01432___ 482 ATTGGGAATTTTTCACCGATACAATGGTTTGGCTTCCGCTGCTTGTGCTT 531
|||||||.||||||||.||.|..|||||.|||||.|||.||||||||.|.
RBAM_008700__ 482 ATTGGGACTTTTTCACTGACAGTATGGTGTGGCTGCCGTTGCTTGTGTTG 531
BSNT_01432___ 532 GGCGCAGAAAAAATTATTAG------AGAGCGGCGTCCGGCGTGGTTTAT 575
|||||.||||||||.||.|| |.|| ||||||||||||||
RBAM_008700__ 532 GGCGCGGAAAAAATCATCAGGGAAAAAAAG------CCGGCGTGGTTTAT 575
BSNT_01432___ 576 CGTTGCGTGTTCGCTGACGTTAATCAACAATTTTTACTTTGCATACATAA 625
|.|.||.|||.|||||||.||.||||||||.|||||.|||||.||.||.|
RBAM_008700__ 576 CTTCGCCTGTGCGCTGACATTGATCAACAACTTTTATTTTGCGTATATTA 625
BSNT_01432___ 626 ACCTTATATTCATCGGAATCTATGTGCTGTTCAGATGGCTGATTAGTTTG 675
|.||.||.||||||||.||.|||.|..|.|||||.|||.||||
RBAM_008700__ 626 ATCTGATTTTCATCGGCATTTATATCTTATTCAGGTGGGTGAT------- 668
BSNT_01432___ 676 GAACCACATGAAG---------AGAAAAGATGGATTCAAATCAGATTATT 716
.||.|.||||| .||||||....|.||||..|||..||||
RBAM_008700__ 669 --CCCCCTTGAAGGCAATGAGACGAAAAGGCTCACTCAATGCAGGATATT 716
BSNT_01432___ 717 TCTCGTTTCAGGCTTCATTTCT-------TTTGGCATCAGTGCGGCGGCG 759
|.|..|.||.|| ||| ||.|||||.||.||.|...|.
RBAM_008700__ 717 TATTCTGTCGGG-------TCTGCTCGGGTTCGGCATAAGCGCAGTTTCC 759
BSNT_01432___ 760 TTTGTGCCGGTAGTATACGGTTTTTTAAACAACCTGCGCCCTCC--ATAC 807
|||.|.||.||.||||||||.|...|..|.||.|||||.||.|| ||.|
RBAM_008700__ 760 TTTATTCCTGTCGTATACGGATACCTTCATAATCTGCGGCCGCCGTATTC 809
BSNT_01432___ 808 AGCCAGAAAATAGAGTGGCTCAATTTCGATGATAATATCTTATTTTCGAG 857
|| ||.|.||.|..|||||..||||....||.||.||.||||||||.||
RBAM_008700__ 810 AG--AGCATATTGCTTGGCTTGATTTTTCCGACAACATTTTATTTTCTAG 857
BSNT_01432___ 858 CCGGATCATCATTGTGCCGGCCGCTTTTCTGCTGTTTTTGTTTATGATTT 907
||||||.|||||..|||||||.||||||.||||.|||.|.|||| .||||
RBAM_008700__ 858 CCGGATAATCATCCTGCCGGCGGCTTTTTTGCTTTTTCTATTTA-CATTT 906
BSNT_01432___ 908 -CTTTTTACAAAAACCGTGTGTTTCGTCTCTTTGCCGGGTTGAGCCTGCT 956
||||.|||||||||||..||||.||.||.|||||.||..|.||.|||||
RBAM_008700__ 907 ACTTTATACAAAAACCGCTTGTTCCGGCTGTTTGCGGGAATCAGTCTGCT 956
BSNT_01432___ 957 GTTTATTCTGTTTCATTTCAGTCCGTATGCGGCAAGCGTCTTTAACGGTT 1006
||.||||||||||||.||||||||||..||||||||.|.|||||||||||
RBAM_008700__ 957 GTATATTCTGTTTCACTTCAGTCCGTTCGCGGCAAGTGCCTTTAACGGTT 1006
BSNT_01432___ 1007 TTTCCGCCCCGCAAAACCGGTTTGAATATATTCTGGCCTTTACCATTGCG 1056
||||.||.|||||.|||.||||||||||..|.|||..|||.||.|||||.
RBAM_008700__ 1007 TTTCAGCTCCGCAGAACAGGTTTGAATACGTCCTGTGCTTCACGATTGCC 1056
BSNT_01432___ 1057 GGAGCAGCTGC-GGCTGGTTTGTCACAGCTGTCTGA-AT-----TGAAAC 1099
|||.|.|.|.| |.|.||.|| ||..||||.||.|| || ||||..
RBAM_008700__ 1057 GGAACGGTTTCAGTCGGGCTT-TCTAAGCTTTCAGACATCAGCATGAAGA 1105
BSNT_01432___ 1100 GGAAAGAACTGCTCCCGGCCGCAGCTGTCGTCCTGCTTCTTTACTTGTAT 1149
|.| ||||...|.||||.|...|||||.|.||.||.|| |||.|.
RBAM_008700__ 1106 GTA------TGCTGATGTCCGCCGTACTCGTCGTTCTGCTCTA-TTGGAG 1148
BSNT_01432___ 1150 CATATTCAAAGGTATAAGCTCGATA---TATGGAAGCCTGCGAATGAAAG 1196
| .||| |.|| .||.|| |.||||
RBAM_008700__ 1149 C-------CAGG--TGAG-GCGGTACAGTCTGGA---------------- 1172
BSNT_01432___ 1197 TATTCTATTGCTCTTACTCATGACAATC------GCAGCCTTGTT----T 1236
|||| |||.| |||.|.|||.| .||.||||.|| |
RBAM_008700__ 1173 -----TATT--TCTGA-TCACGCCAACCTGCCCGTCATCCTTCTTCTGGT 1214
BSNT_01432___ 1237 GCT-------GCAGCT---TTTGC------GAAAAAACGGGCAAAAATG- 1269
||| ||.||| ||||| ||.||.||.| |||.|
RBAM_008700__ 1215 GCTGAGCATAGCCGCTTTCTTTGCAGCAAAGACAAGACTG----AAAGGC 1260
BSNT_01432___ 1270 GCTGTGTACG--GTATA----ATCATTCTTTCTT--CGCTGT--TTGTCG 1309
||.|||..|| ||.|| .||||| ||.||| .||||| ||...|
RBAM_008700__ 1261 GCGGTGCCCGCCGTCTATGCTGTCATT-TTGCTTACGGCTGTGCTTACGG 1309
BSNT_01432___ 1310 CCAACTCCTATCAAAAATACGCGCTCTCAGAAGGCGG--CGATTTGGATA 1357
|.||..|.|||.|||||||.||..|.||||||||||| .||||| |||
RBAM_008700__ 1310 CTAATACATATGAAAAATATGCTTTATCAGAAGGCGGGAAGATTT--ATA 1357
BSNT_01432___ 1358 GTGTGACAAAAGAATATCTT----ACAAGTGAGGAATACAGAGGGCGGGA 1403
..|| |..|.|||.||| ||..|||..||.||.|.|||....||
RBAM_008700__ 1358 CGGT----ATCGCATACCTTTATGACGGGTGCTGACTATAAAGGCAAAGA 1403
BSNT_01432___ 1404 ATCATCTGAGCTCA-TCAGACGT-TTACAGAAGGAAGACGATGATCCGCT 1451
|..|||.||||||| |||| ||| |.|.|||| .|||||..|||||||.|
RBAM_008700__ 1404 ACAATCGGAGCTCATTCAG-CGTCTGAAAGAA-AAAGACCCTGATCCGTT 1451
BSNT_01432___ 1452 CATG--AGAATCGATTGGATGAACGGGGTCCGCAATAATACGCCAATCAT 1499
|| .|..|.||||||||||||||.||...||||||.||.||.|||||
RBAM_008700__ 1452 --TGCCCGTTTAGATTGGATGAACGGTGTTTTCAATAACACCCCGATCAT 1499
BSNT_01432___ 1500 TTACGGATTTAATGGCTTCAGCGCGTATTCCAGCATTTTAAACAAAGATC 1549
.|||||.||.||.||.|||||||..||.||.|||||..|.|||....|||
RBAM_008700__ 1500 ATACGGGTTCAACGGATTCAGCGTATACTCAAGCATACTGAACCGCAATC 1549
BSNT_01432___ 1550 TGCTGGCCTTCTATTGGAATGA-TTTAAGCATCGATATGGGCAGGGAAAG 1598
|||||.||||.||.|||.|.|| .|..|| ||.||.||||||||.|||||
RBAM_008700__ 1550 TGCTGTCCTTTTACTGGCACGACCTCCAG-ATTGACATGGGCAGAGAAAG 1598
BSNT_01432___ 1599 CGTCAGCCGTTACGCGTCATTGGGAGACAGGGCGAATTTATACAGCCTGC 1648
|||||||||.||.|||.||||.|||.|||||||.||||||||||||||||
RBAM_008700__ 1599 CGTCAGCCGCTATGCGACATTAGGAAACAGGGCTAATTTATACAGCCTGC 1648
BSNT_01432___ 1649 TTTACGGCAAATATTATATGACCGAAAAAACAAACGAAGCCAGCGTCCCG 1698
|||||||.||||||||||||||.||||||||||||||.|||.||||.|||
RBAM_008700__ 1649 TTTACGGAAAATATTATATGACGGAAAAAACAAACGAGGCCGGCGTGCCG 1698
BSNT_01432___ 1699 TACGGCTTCAAAAAGCATT--TAGAAACAGAGCATTATGCAGTTTATGAG 1746
|||||.|||||||| |.| |.|||.||...||||||||.||||||.|.
RBAM_008700__ 1699 TACGGGTTCAAAAA--AATCATGGAATCAACCCATTATGCGGTTTATCAA 1746
BSNT_01432___ 1747 AATCAGTACATGCTTCCATTCGTTAAAACAGCGGATGCCATATACAGCGA 1796
|||||.||.||||||||.|||||....|||||.|||..|.||||.|.|||
RBAM_008700__ 1747 AATCAATATATGCTTCCGTTCGTACGGACAGCCGATCGCGTATATAACGA 1796
BSNT_01432___ 1797 AAGTGAGCTGGACCGATTGCCCGCTCTTGCGAAAGAACAGGCGATGCT-- 1844
..|.|..|||.|...|..||||||.|||||.|..||||.|||.|||||
RBAM_008700__ 1797 GGGCGGCCTGAAAAAAGCGCCCGCCCTTGCCAGGGAACGGGCAATGCTTG 1846
BSNT_01432___ 1845 ----GA-----AAGGAATCATATTAAAAGATCCATCAGGAAAAACGGAGC 1885
|| |.||||||| |..|.|.|||.||.||||||.|...|
RBAM_008700__ 1847 ACGGGATCGTCATGGAATCA----AGCACAACCAACACGAAAAAAGCGCC 1892
BSNT_01432___ 1886 AGACACCAAAACAGTCCAATTTGATCACCAAGTCGGACA----TTACCGC 1931
.||..|.||| |||.||||| .|.||.||| |..|.||
RBAM_008700__ 1893 TGAGGCGAAA-------AATATGATC----CGCCGTACAGAGGTAGCGGC 1931
BSNT_01432___ 1932 AAAACAAGCCCAGTATCAAAACGGGCTGCTAACCGTAACTGGA-GAAAAC 1980
..||||.|.|.|.|||||.|||||..|.||.||.|||| | |||.||
RBAM_008700__ 1932 CGAACATGGCGATTATCATAACGGCATCCTGACGGTAA----ACGAAGAC 1977
BSNT_01432___ 1981 GGAGGAGAGCTGATCATCACCCCG-AAACAGCCATCAT---CCGCTCCGG 2026
||.||.|..|||.||||.||.||| ||.|.||.|..|| |.|| |
RBAM_008700__ 1978 GGCGGCGGCCTGGTCATTACGCCGCAAGCCGCTAAGATGGACAGC----G 2023
BSNT_01432___ 2027 GAGACTACTATGTCAGCTTTTATTTGAAAAGCAAAGCAAAAGA-CAGAGG 2075
|.||.||.||.|||||||||||||||||.|..|||||.||.|| ||| ||
RBAM_008700__ 2024 GCGATTATTACGTCAGCTTTTATTTGAAGAATAAAGCGAAGGACCAG-GG 2072
BSNT_01432___ 2076 ATTTGCGTTAAAGGTAAATGATTATGTCACAACAAGGAAATCGAACAAAT 2125
.|||.|.|||||.||.||.|||||....|||||.||.||||||||..|||
RBAM_008700__ 2073 CTTTACATTAAAAGTGAACGATTACACGACAACGAGAAAATCGAATCAAT 2122
BSNT_01432___ 2126 CGATATATAAAACCGGAGTAAATAATATAACGGTAAGAGTGCCTAAATCA 2175
|.||.||.|||||.||.||.||..||.|.||.||.||||||||.|||.||
RBAM_008700__ 2123 CCATTTACAAAACAGGTGTCAACGATGTTACTGTCAGAGTGCCGAAAACA 2172
BSNT_01432___ 2176 GGCCATATCTCAATCAATCTTCCGAAAGGAACCTATGAGC-TGAGAAACA 2224
....|.|||..||||..|||.||||||||..|.|||.||| |||.|.||
RBAM_008700__ 2173 AAAAACATCCAAATCCGTCTGCCGAAAGGGTCGTATCAGCTTGACAGAC- 2221
BSNT_01432___ 2225 TAGCGCTCTATGAAGAAAATTACCAAACGCTGAAAAACGCTGTAATGCAA 2274
|.|||||.|||||||||...|||.|.||||||||||.||| ||.|..
RBAM_008700__ 2222 TGGCGCTTTATGAAGAACGGTACGATACGCTGAAAAGCGC----ATACCG 2267
BSNT_01432___ 2275 AATAAAACAGAGAAAGCA------GACAAACTGAATTGGAACAAAAATCG 2318
| |||.|.||.||||.| |.|.|.||.|..|||..|..||||
RBAM_008700__ 2268 A--AAAGCGGAAAAAGAACCGCGGGCCGATCTCAGCTGGCGCGGAAAT-- 2313
BSNT_01432___ 2319 ACTGAC-CTTTGCCTATCATCTGT-------CAAAA-----GACCAGTAC 2355
|| ||| |.|||| || || ||||| |..|.|||.
RBAM_008700__ 2314 ----ACGCTT--CATATC-TC-GTATGAAAACAAAACCCGCGCGCCGTAT 2355
BSNT_01432___ 2356 ATCATGCTTCCGATCCCATATGAAAAAGGCTGGGAGCTGAAGATCAACGG 2405
||||||||||||||.|||||||||||||||||||||||||||||.|||||
RBAM_008700__ 2356 ATCATGCTTCCGATTCCATATGAAAAAGGCTGGGAGCTGAAGATAAACGG 2405
BSNT_01432___ 2406 AAAAACA-CAGAAGATCGAAAAAGCGGATTATGCTTTTATAGGCTTCAAG 2454
.|.||| .||.||||.|||||||||||||||.|.||.||.||.||.||.
RBAM_008700__ 2406 -CAGACAGGAGCAGATTGAAAAAGCGGATTATTCCTTCATCGGATTTAAA 2454
BSNT_01432___ 2455 GCGCAAAAGGGAGACAATCACATTGAGCTGACTTACTATCCGCCATACTT 2504
||||||||.|||.|.||..|.|||.|..|.||.||.||.|||||.|..||
RBAM_008700__ 2455 GCGCAAAAAGGAAAAAACGATATTCAATTAACGTATTACCCGCCGTTTTT 2504
BSNT_01432___ 2505 CAAA------------ATATCGGCGATCATATCTCTCGTCAGTCTGCTGC 2542
.||| .||||||.||||| ||
RBAM_008700__ 2505 TAAACCCGCGGCCGCTCTATCGGTGATCA-------------------GC 2535
BSNT_01432___ 2543 TTGCTGTTTTC-----TATAT-----AAGACGTAAAAAGCCCGGCTCTAT 2582
.|..||||||| ||||| |||||..|||||||||||||||..
RBAM_008700__ 2536 CTCGTGTTTTCGGCTATATATGTGAGAAGACAAAAAAAGCCCGGCTCTTA 2585
BSNT_01432___ 2583 ATAG 2586
|
RBAM_008700__ 2586 A--- 2586
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