Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01425 and RBAM_008660
See
Amino acid alignment /
Visit
BSNT_01425 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:07
# Commandline: needle
# -asequence dna-align/BSNT_01425___yfhK.1.9828.seq
# -bsequence dna-align/RBAM_008660___yfhK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01425___yfhK-RBAM_008660___yfhK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01425___yfhK-RBAM_008660___yfhK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01425___yfhK
# 2: RBAM_008660___yfhK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 568
# Identity: 346/568 (60.9%)
# Similarity: 346/568 (60.9%)
# Gaps: 89/568 (15.7%)
# Score: 887.5
#
#
#=======================================
BSNT_01425___ 1 ATGAAAAAGAAACAAG----TAATGCTCGCTTTAACAGCTGCCGCAGGAC 46
|||||.|.|||| ||| ||| .|||.||.|...|.||||||||||
RBAM_008660__ 1 ATGAACATGAAA-AAGGGGTTAA---CCGCATTTATTCCGGCCGCAGGAC 46
BSNT_01425___ 47 TGGGTTT-----------GACAGCAC--TTCATTCCGCTCCCGCAGCAAA 83
|..|.|| || .|||| ||..||.||.|||.|||||.||
RBAM_008660__ 47 TTTGCTTATTTTTAGCCGGA-GGCACCGTTTTTTTCGATCCGGCAGCGAA 95
BSNT_01425___ 84 AGCTGCGCCCCTTCAC--GACATATCT-GTCAGCATGCCATCATCCGATA 130
.||.||..|..||||| ||||.|..| |.|| |..||.|.||||
RBAM_008660__ 96 TGCCGCAGCAGTTCACCAGACAAAAATAGACA------CCGCAGCAGATA 139
BSNT_01425___ 131 CTTACATCATAAAAGCAGGAAAACTGAATGTCCGGACTGAGCCAAATCAT 180
|.||.|||.|.|||||||||.||||.||.|||||.|..||.||||||.|.
RBAM_008660__ 140 CATATATCGTGAAAGCAGGAGAACTTAACGTCCGCAAAGAACCAAATAAA 189
BSNT_01425___ 181 GAAGGTGATATTCTCGGCACTGTATC-ATCAGAACA------AAAGGTAA 223
.||||....|||.||||||| |..|| .|||||..| ||||||.|
RBAM_008660__ 190 CAAGGGTCGATTATCGGCAC-GCTTCGTTCAGAGGATTCCGTAAAGGTTA 238
BSNT_01425___ 224 AAGTCGATAGGTTCGTAAA--TGCCGATTGGGCTCAAATTCATTTCAAAG 271
|| || |.||| || .||.|||||||||.|.|||.|||.|||||
RBAM_008660__ 239 AA--CG---GCTTC---AAGGAGCAGATTGGGCTGAGATTGATTACAAAG 280
BSNT_01425___ 272 GAAAGAAAGCATATATTTCAACTCACTTTTTAATGAAAACCGCAAGCC-- 319
|..|.|||||.|||||.||.||.||.|||.|.||||| || ||||
RBAM_008660__ 281 GTCACAAAGCCTATATCTCCACACATTTTCTGATGAA----GC-AGCCGG 325
BSNT_01425___ 320 ---AAGCGAAAACAACGAAACAGACAGCCTTCTATGCACCGACGCCCGAA 366
|.|||...||..|||||||.||.||.||.|||.|.|||||....|||
RBAM_008660__ 326 TGAAGGCGGTGACGGCGAAACAAACCGCTTTTTATACGCCGACTTTGGAA 375
BSNT_01425___ 367 AATGGAAAAGCTAAACAGCTCTCATCTGGAACAG-AGGTGA------CAA 409
|..||.||| |||..| ||.|..|.|| .||||| |||
RBAM_008660__ 376 ACCGGCAAA---AAAGGG------TCCGTTAAAGCGGGTGAAACCGTCAA 416
BSNT_01425___ 410 --TACTTGGGTGGGGATTCAGTGAAAACGGCGGATTTGACTTCACTTGGG 457
|.||.||.|||||.|||||..|..||||.|||||||||...|..||||
RBAM_008660__ 417 TGTGCTCGGCTGGGGGTTCAGCCATGACGGAGGATTTGACCGTAAATGGG 466
BSNT_01425___ 458 CGTTCGTGGATTATGGCGG---AGTTAAAGGCTATATTCACACAAAGGAT 504
|||.|||....||.||||| || .|||.|||.|..|.||....||.
RBAM_008660__ 467 CGTACGTCACATACGGCGGGAAAG---CAGGTTATGTGAAAACGGCCGAC 513
BSNT_01425___ 505 TTA---CAAATGCGATAA 519
||| |||| .||||
RBAM_008660__ 514 TTAACTCAAA---AATAA 528
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.