Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01425 and RBAM_008660

See Amino acid alignment / Visit BSNT_01425 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:07
# Commandline: needle
#    -asequence dna-align/BSNT_01425___yfhK.1.9828.seq
#    -bsequence dna-align/RBAM_008660___yfhK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01425___yfhK-RBAM_008660___yfhK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01425___yfhK-RBAM_008660___yfhK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01425___yfhK
# 2: RBAM_008660___yfhK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 568
# Identity:     346/568 (60.9%)
# Similarity:   346/568 (60.9%)
# Gaps:          89/568 (15.7%)
# Score: 887.5
# 
#
#=======================================

BSNT_01425___      1 ATGAAAAAGAAACAAG----TAATGCTCGCTTTAACAGCTGCCGCAGGAC     46
                     |||||.|.|||| |||    |||   .|||.||.|...|.||||||||||
RBAM_008660__      1 ATGAACATGAAA-AAGGGGTTAA---CCGCATTTATTCCGGCCGCAGGAC     46

BSNT_01425___     47 TGGGTTT-----------GACAGCAC--TTCATTCCGCTCCCGCAGCAAA     83
                     |..|.||           || .||||  ||..||.||.|||.|||||.||
RBAM_008660__     47 TTTGCTTATTTTTAGCCGGA-GGCACCGTTTTTTTCGATCCGGCAGCGAA     95

BSNT_01425___     84 AGCTGCGCCCCTTCAC--GACATATCT-GTCAGCATGCCATCATCCGATA    130
                     .||.||..|..|||||  ||||.|..| |.||      |..||.|.||||
RBAM_008660__     96 TGCCGCAGCAGTTCACCAGACAAAAATAGACA------CCGCAGCAGATA    139

BSNT_01425___    131 CTTACATCATAAAAGCAGGAAAACTGAATGTCCGGACTGAGCCAAATCAT    180
                     |.||.|||.|.|||||||||.||||.||.|||||.|..||.||||||.|.
RBAM_008660__    140 CATATATCGTGAAAGCAGGAGAACTTAACGTCCGCAAAGAACCAAATAAA    189

BSNT_01425___    181 GAAGGTGATATTCTCGGCACTGTATC-ATCAGAACA------AAAGGTAA    223
                     .||||....|||.||||||| |..|| .|||||..|      ||||||.|
RBAM_008660__    190 CAAGGGTCGATTATCGGCAC-GCTTCGTTCAGAGGATTCCGTAAAGGTTA    238

BSNT_01425___    224 AAGTCGATAGGTTCGTAAA--TGCCGATTGGGCTCAAATTCATTTCAAAG    271
                     ||  ||   |.|||   ||  .||.|||||||||.|.|||.|||.|||||
RBAM_008660__    239 AA--CG---GCTTC---AAGGAGCAGATTGGGCTGAGATTGATTACAAAG    280

BSNT_01425___    272 GAAAGAAAGCATATATTTCAACTCACTTTTTAATGAAAACCGCAAGCC--    319
                     |..|.|||||.|||||.||.||.||.|||.|.|||||    || ||||  
RBAM_008660__    281 GTCACAAAGCCTATATCTCCACACATTTTCTGATGAA----GC-AGCCGG    325

BSNT_01425___    320 ---AAGCGAAAACAACGAAACAGACAGCCTTCTATGCACCGACGCCCGAA    366
                        |.|||...||..|||||||.||.||.||.|||.|.|||||....|||
RBAM_008660__    326 TGAAGGCGGTGACGGCGAAACAAACCGCTTTTTATACGCCGACTTTGGAA    375

BSNT_01425___    367 AATGGAAAAGCTAAACAGCTCTCATCTGGAACAG-AGGTGA------CAA    409
                     |..||.|||   |||..|      ||.|..|.|| .|||||      |||
RBAM_008660__    376 ACCGGCAAA---AAAGGG------TCCGTTAAAGCGGGTGAAACCGTCAA    416

BSNT_01425___    410 --TACTTGGGTGGGGATTCAGTGAAAACGGCGGATTTGACTTCACTTGGG    457
                       |.||.||.|||||.|||||..|..||||.|||||||||...|..||||
RBAM_008660__    417 TGTGCTCGGCTGGGGGTTCAGCCATGACGGAGGATTTGACCGTAAATGGG    466

BSNT_01425___    458 CGTTCGTGGATTATGGCGG---AGTTAAAGGCTATATTCACACAAAGGAT    504
                     |||.|||....||.|||||   ||   .|||.|||.|..|.||....||.
RBAM_008660__    467 CGTACGTCACATACGGCGGGAAAG---CAGGTTATGTGAAAACGGCCGAC    513

BSNT_01425___    505 TTA---CAAATGCGATAA    519
                     |||   ||||   .||||
RBAM_008660__    514 TTAACTCAAA---AATAA    528


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