Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00404 and RBAM_008630

See Amino acid alignment / Visit BSNT_00404 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:10
# Commandline: needle
#    -asequence dna-align/BSNT_00404___mpr.1.9828.seq
#    -bsequence dna-align/RBAM_008630___mpr.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00404___mpr-RBAM_008630___mpr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00404___mpr-RBAM_008630___mpr.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00404___mpr
# 2: RBAM_008630___mpr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 992
# Identity:     664/992 (66.9%)
# Similarity:   664/992 (66.9%)
# Gaps:         130/992 (13.1%)
# Score: 2206.5
# 
#
#=======================================

BSNT_00404___      1 ATGAAATTAGTTCCAAGATTCAGAAAACAATGGTTCGCTTA--CTTAACG     48
                     |||||...||||.|         |||||    |.|.|||.|  ||||.||
RBAM_008630__      1 ATGAAGACAGTTTC---------AAAAC----GATTGCTGAGCCTTACCG     37

BSNT_00404___     49 GTTTTGTGTTTGGCTT--TGGCAGCAGCGGTTTC---TTTTGGCGTACCG     93
                     ..||         |||  ||.||      |||||   .||||..||..|.
RBAM_008630__     38 CATT---------CTTACTGTCA------GTTTCATTATTTGCTGTTTCA     72

BSNT_00404___     94 GCAAAAGC----GGCAGAGAACCCGCAAACTTCTGTATCGAATACCGGTA    139
                     |||.||||    |||||    ||||||.||.||||||||.||.|.||||.
RBAM_008630__     73 GCAGAAGCAGCGGGCAG----CCCGCAGACATCTGTATCAAACAGCGGTG    118

BSNT_00404___    140 AAGAAGGTGATGCTACGAAAAACCAAACGTCAAAAGCAG-----------    178
                     |.||...|||.||             ||.|||.||.|||           
RBAM_008630__    119 AGGAGTTTGACGC-------------ACATCAGAATCAGCCTGTACAAAC    155

BSNT_00404___    179 --AACAGGTTTCTGCCCCTTATGAGGGAATCGG---------AAAAACAA    217
                       .||||...||..||.|||||||.|||| |||         |||.|||.
RBAM_008630__    156 AACACAGACATCCCCCGCTTATGAAGGAA-CGGGCCTCACCAAAAGACAG    204

BSNT_00404___    218 GT-----AAATCGTTATACGGCGGCCAAACGGAACTGGAGAAAAACATTC    262
                     .|     |||       ||.||      ||  |.|||       ||| ||
RBAM_008630__    205 CTTGCACAAA-------ACAGC------AC--AGCTG-------ACA-TC    231

BSNT_00404___    263 AA-ACTTTACAGCCTTCGAGCATTATCGGAACTGATGAACGCACCAGAA-    310
                     || .|.|||.|||||||.||.|||||.||.||.||.|||||.|.||||| 
RBAM_008630__    232 AAGTCATTAAAGCCTTCCAGTATTATTGGGACAGACGAACGAATCAGAAT    281

BSNT_00404___    311 -TCTCCAGCACGACATCTTTTCCATATAGAGCAACCGTTCAACTGTCAAT    359
                      |||||  .||.|||||.|||||||||.||||.||.|..||.|||.|..|
RBAM_008630__    282 TTCTCC--TACAACATCATTTCCATATCGAGCGACAGCACAGCTGACCGT    329

BSNT_00404___    360 CAAGTATCC-----CAACACTTCAAGCACTTATGGATGTACCGGATTTTT    404
                     .|  .||.|     ||.||   |||||||.||.|||||.|||||.|||||
RBAM_008630__    330 TA--CATACAGCGGCAGCA---CAAGCACCTACGGATGCACCGGTTTTTT    374

BSNT_00404___    405 AATCAATCCAAATACAGTCGTCACGGCTGGACATTGTGTGTACAGCCAGG    454
                     ..|||||.|..|.||..||||.|||||.||||||||.|||||...||||.
RBAM_008630__    375 TGTCAATGCCGACACGATCGTTACGGCGGGACATTGCGTGTATGACCAGA    424

BSNT_00404___    455 ATCATGGATGGGCTTCGACGATAACCGCCGCGCCGGGCCGCAATGGCTCG    504
                     |..|.||.|||||.||||..||.||.||.||.|||||||||||.||.||.
RBAM_008630__    425 AAAACGGCTGGGCATCGAAAATTACGGCAGCTCCGGGCCGCAACGGATCA    474

BSNT_00404___    505 TCATATCCGTACGGTACTTATTCAGGCACGATGTTTTACTCCGTCAAAGG    554
                     ||.||.||||||||..||||||||||||.||..||.|||...||||||||
RBAM_008630__    475 TCGTACCCGTACGGCTCTTATTCAGGCAAGACATTCTACAGTGTCAAAGG    524

BSNT_00404___    555 ATGGACGGAAAGCAAA----GACACCAATTATGATTACGGAGCTATTAAA    600
                     .|||||    ||.|||    |||||.||.||.||.|||||.||.||.|||
RBAM_008630__    525 GTGGAC----AGAAAATGGTGACACAAACTACGACTACGGCGCAATCAAA    570

BSNT_00404___    601 TTAAACGGTTCTCCTGGAAACACGGTTGGCTGGTACGGCTACCGGACTAC    650
                     .|||||||.||.||.||.||.||.||.||||||||||||||||||||.||
RBAM_008630__    571 GTAAACGGGTCGCCCGGGAATACCGTCGGCTGGTACGGCTACCGGACGAC    620

BSNT_00404___    651 AAACAGCAGCAGTCCCGTGGGCCTTTCCTCGTCAGTGACAGGATTCCCGT    700
                     .|||||...||||||.|..||.||||||||..|.||||||||||..||||
RBAM_008630__    621 CAACAGTTCCAGTCCGGCCGGGCTTTCCTCAACCGTGACAGGATATCCGT    670

BSNT_00404___    701 GTGACAAAACCTTTGGCACGATGTGGTCTGATACAAAGCCGATTCGCTCC    750
                     |.||||||...|..||..|.||||||||.||.|..|||||||||||.||.
RBAM_008630__    671 GCGACAAAGTGTCCGGTTCCATGTGGTCGGACAGCAAGCCGATTCGTTCT    720

BSNT_00404___    751 GCTGAAACGTATAAGCTGACCTATACAACCGATACGTACGGCTGCCAAAG    800
                     ||.||.||.|||||.||.||.||.||.||.|||||||.|||||||||.||
RBAM_008630__    721 GCCGAGACATATAAACTCACTTACACGACAGATACGTTCGGCTGCCAGAG    770

BSNT_00404___    801 CGGCTCGCCTGTTTATCGAAACTACAGTGATACAGGGCAGACAGCTATTG    850
                     |||.|||||.|||||.||.||.|||||.||.||.||.|||||.||.||||
RBAM_008630__    771 CGGATCGCCCGTTTACCGCAATTACAGCGACACCGGCCAGACCGCCATTG    820

BSNT_00404___    851 CCATTCACACGAACGGAGGATCGTCATATAACTTGGGAACAAGGGTGACG    900
                     |||||||.||.|||||.||.|||||.||.||..||||||||||||||||.
RBAM_008630__    821 CCATTCATACAAACGGCGGGTCGTCTTACAATCTGGGAACAAGGGTGACA    870

BSNT_00404___    901 AACGATGTATTCAACAATATTCAATATTGGGCAAATCAATAA    942
                     |||..|||||||.||||.||||||||||||.|||||||||||
RBAM_008630__    871 AACAGTGTATTCGACAACATTCAATATTGGTCAAATCAATAA    912


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