Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01418 and RBAM_008600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:07
# Commandline: needle
# -asequence dna-align/BSNT_01418___yfhH.1.9828.seq
# -bsequence dna-align/RBAM_008600___yfhH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01418___yfhH-RBAM_008600___yfhH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01418___yfhH-RBAM_008600___yfhH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01418___yfhH
# 2: RBAM_008600___yfhH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 328
# Identity: 237/328 (72.3%)
# Similarity: 237/328 (72.3%)
# Gaps: 26/328 ( 7.9%)
# Score: 817.0
#
#
#=======================================
BSNT_01418___ 1 ATGGAGAAACGATACAGTCAAATGACACCTCACGAACTCAATACCGAAAT 50
|||||.||||||||||||||||||||.|||||.|||||..|.||.|||||
RBAM_008600__ 1 ATGGACAAACGATACAGTCAAATGACGCCTCATGAACTACAGACAGAAAT 50
BSNT_01418___ 51 CGCATTACTTTCTGAAAAAGCAAGAAAAGCCGAACAGCAT-GGAATCATA 99
.||...|||..|.||||||||..|||||||.|||||| || ||.||..||
RBAM_008600__ 51 TGCGGGACTGACGGAAAAAGCGCGAAAAGCGGAACAG-ATGGGCATTGTA 99
BSNT_01418___ 100 AACGAACTGGCAGTGCTCGAACGGAAAATTACGATGGCAAAAGCATATTT 149
||.||||||||.|||||.||||||||||||||||||||.|||||.||..|
RBAM_008600__ 100 AATGAACTGGCCGTGCTTGAACGGAAAATTACGATGGCCAAAGCTTACAT 149
BSNT_01418___ 150 GCTGAACCCGGAAGA-TTACTCACC----GGGAGAAACATATCGTGTGGA 194
||||||||||||||| ||.|...|| |||.| ||||...|.||
RBAM_008600__ 150 GCTGAACCCGGAAGACTTTCGGCCCGGCGGGGTG-----TATCAGATAGA 194
BSNT_01418___ 195 AAACACTGAGGACGAGTTTAC-CATCAGTTATTTAAATGGCGTTTTCGCA 243
|....||||.||| |.|||.| |||...|||..|.||.|||||.|||||.
RBAM_008600__ 195 AGGTTCTGATGAC-ACTTTCCGCATTGATTACATCAACGGCGTATTCGCC 243
BSNT_01418___ 244 TGGGGATACAGGACCTCTTCCCC------CCAGCAAGAGGAAGCTCTGCC 287
||||||.|||| .|||||||| |..| ||.|||||.|||||
RBAM_008600__ 244 TGGGGACACAG---ATCTTCCCCGTCTGACGGG---GAAGAAGCACTGCC 287
BSNT_01418___ 288 AATCTCAGTATTGCAAGAAAAAGAATAA 315
.||.||.||.||..||||||||.|||||
RBAM_008600__ 288 GATTTCCGTTTTAAAAGAAAAAAAATAA 315
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