Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01417 and RBAM_008590

See Amino acid alignment / Visit BSNT_01417 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:07
# Commandline: needle
#    -asequence dna-align/BSNT_01417___recX.1.9828.seq
#    -bsequence dna-align/RBAM_008590___recX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01417___recX-RBAM_008590___recX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01417___recX-RBAM_008590___recX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01417___recX
# 2: RBAM_008590___recX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 804
# Identity:     613/804 (76.2%)
# Similarity:   613/804 (76.2%)
# Gaps:          21/804 ( 2.6%)
# Score: 2300.0
# 
#
#=======================================

BSNT_01417___      1 ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTT     50
                     |||||||||||||||||||||||.||.|||||.||.|||||.||.|||||
RBAM_008590__      1 ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTT     50

BSNT_01417___     51 CAATATTTTTCTGGATGATAAATACGCCTTCAGCGTGGACGCGGATGTGC    100
                     |||.||.|||||.|||||.|||||.||.||||||||.|||||.||.||||
RBAM_008590__     51 CAACATCTTTCTTGATGAGAAATATGCATTCAGCGTCGACGCCGACGTGC    100

BSNT_01417___    101 TCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATC    150
                     |.|||...|||||.||.||.||.||.||||||||.||.||.||||||||.
RBAM_008590__    101 TTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATT    150

BSNT_01417___    151 ATTGAGATTCAATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCT    200
                     .||||.||.||.|||||||||||.|||||.||||.|||.|||||.||..|
RBAM_008590__    151 CTTGAAATCCAGTACGGCGATGACGTGAAAAAAGCCTTTAACCGCGCCGT    200

BSNT_01417___    201 TGACTTTTTATCCTATCGAATGCGGTC-GACGAAAGAGGTCGAGGACCAC    249
                     .||.||||||||.||.||.|||||.|| || .|||||.|||..|||.||.
RBAM_008590__    201 AGAATTTTTATCATACCGGATGCGCTCTGA-AAAAGAAGTCCGGGATCAT    249

BSNT_01417___    250 TTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAG    299
                     .|.||||||||||||||..||..|...||||||.|.|||||||||||||.
RBAM_008590__    250 CTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAA    299

BSNT_01417___    300 GCTTAACGATTACAAGTACTTAAACGACCAGGAATTTGCCGCAGCCTATG    349
                     .||..||||||||...||||||||.|||.|.||||||||.|.||||||||
RBAM_008590__    300 ACTGTACGATTACCGCTACTTAAATGACAAAGAATTTGCGGAAGCCTATG    349

BSNT_01417___    350 TCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGA    399
                     ..|||||.|||||||||||||||||.|||||||||||.||..|||||.|.
RBAM_008590__    350 CGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGC    399

BSNT_01417___    400 GAGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAG    449
                     |||||.|.||||||.|||||.||.||||||||.||.||||||.||||.||
RBAM_008590__    400 GAGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAG    449

BSNT_01417___    450 TTCCTTTTCCTTTGAAGATCAGACAAGAGAAGCGGTCAAGCATGTTG--A    497
                     |.|.|||.|.|||||.||.||.|.|..|||||||.|.||.|||.|.|  |
RBAM_008590__    450 TGCGTTTACATTTGATGAGCAAATACAAGAAGCGCTGAAACATATCGGCA    499

BSNT_01417___    498 AAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGC    547
                     |||  |.||.|||||.||.||||||||.||.||.|||||..|||.|||||
RBAM_008590__    500 AAA--TCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGC    547

BSNT_01417___    548 GCGCCCAGCTGCAGCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGC    597
                     |.||.|||.|||||||||||||.||.||.|||.|.||.||.||.||||..
RBAM_008590__    548 GGGCGCAGATGCAGCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAAT    597

BSNT_01417___    598 GCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGGAGAAAGA    647
                     ||.||..||||.||||..||.|||||.|||||.||.||..|.||||..||
RBAM_008590__    598 GCCGCTCTGGAGCAGACGGAGTATGAGAATGACGATGAAGCCGAGATGGA    647

BSNT_01417___    648 AGCGCTG--CGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGA    695
                     |||.|||  .||  |||.||||||||||||.|.||.||||||||.|||||
RBAM_008590__    648 AGCTCTGAAGGC--TCATGCGGAAAAAGCGATCAGGAAATACCGTTATGA    695

BSNT_01417___    696 CGGCTCATATGAAAGCGCCATTAAGGTCAAACAATTTTTATTCCGCAAAG    745
                     ||||...||||||||||..||.|||||.|||||.|..||||||.|.||||
RBAM_008590__    696 CGGCAGCTATGAAAGCGGAATGAAGGTTAAACAGTACTTATTCAGAAAAG    745

BSNT_01417___    746 GATTCTCACTCGATTTA----ATCGAGCAATTACTGCAGGAAGAGGAGTA    791
                     ||||    |||||||.|    ||.||.|||||..||||||||||||||||
RBAM_008590__    746 GATT----CTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTA    791

BSNT_01417___    792 CTGA    795
                     .   
RBAM_008590__    792 A---    792


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