Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01411 and RBAM_008550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:07
# Commandline: needle
# -asequence dna-align/BSNT_01411.1.9828.seq
# -bsequence dna-align/RBAM_008550___yfhC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01411-RBAM_008550___yfhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01411-RBAM_008550___yfhC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01411
# 2: RBAM_008550___yfhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 625
# Identity: 334/625 (53.4%)
# Similarity: 334/625 (53.4%)
# Gaps: 194/625 (31.0%)
# Score: 1042.5
#
#
#=======================================
BSNT_01411 0 -------------------------------------------------- 0
RBAM_008550__ 1 ATGCCGAAAACCGAACAATTACAGCAAAACGAAAGTCTTGCACATACAAT 50
BSNT_01411 0 -------------------------------------------------- 0
RBAM_008550__ 51 CAGAAACAGAAGATCCATCCGGTCGTTTAAACCGGAAACCGTACCTTCTG 100
BSNT_01411 1 --------------ATGCTTGAAACGGCAAAATATGCGCCAAATCACAGA 36
||||||||||||||....||.||.||.||.||||||
RBAM_008550__ 101 AGGTCATATTAGATATGCTTGAAACGGCCGTTTACGCACCGAACCACAGA 150
BSNT_01411 37 GTGACAGAGCCATGGAGATTTATTTACGTTTCCAGTGAGACAGGTAAAGC 86
.||||.|||||||||.|.|||||.||||...|.||.||..|.||.|||||
RBAM_008550__ 151 CTGACGGAGCCATGGCGTTTTATCTACGCAGCAAGCGAAGCGGGAAAAGC 200
BSNT_01411 87 GAACCT------CATCAATA-----CATTTGCAGCGTTCTCTATGAAATC 125
.||.|| ||.| || ||||| ||| |||
RBAM_008550__ 201 AAAGCTTGCGGACAGC--TACGTCTCATTT------TTC------AAA-- 234
BSNT_01411 126 CAAGCCGGAT-----ATGA---CA--GAGGAAA--------AGCTTCAAA 157
|| ||| |||| || ||||||| |.|.|.|.|
RBAM_008550__ 235 -AA----GATAAAAGATGATTTCAACGAGGAAAAAGAGCGGAACATGAGA 279
BSNT_01411 158 ATTTCAAAAACACACTTGGGCG-CGTTCCGGGATTTCTCCTCGTCGTGTT 206
| ||||.|.|| ||| |||||||||||||.|.||.|||||.||
RBAM_008550__ 280 A----AAAATCTCA-----GCGCCGTTCCGGGATTTTTGCTGGTCGTCTT 320
BSNT_01411 207 TCGGGAAGATGAAAACGAAAGAGCGCGGGACGACGATTTTGCGGCAACAA 256
....|||||||||||.|||....||.|..||||.|||||.|||||
RBAM_008550__ 321 AAAAGAAGATGAAAATGAATTTACGAGAAACGATGATTTCGCGGC----- 365
BSNT_01411 257 GCT---CG--TTGATTCAAAATCTTCAGCTTCTCGCTTGGGAAAAAGGAA 301
||| || .||||||||||.||||||||||||||....|||||.||.|
RBAM_008550__ 366 GCTGAGCGGCATGATTCAAAACCTTCAGCTTCTCGCACATGAAAACGGCA 415
BSNT_01411 302 TCGGCATGGTTTGGAAAAGCGGAAAAATCCTTTATGACAAAGAAGTCCAT 351
||||||||||.|||||||||||....||..|.|||||||||.|.||.||.
RBAM_008550__ 416 TCGGCATGGTCTGGAAAAGCGGCCGCATTATGTATGACAAACAGGTGCAC 465
BSNT_01411 352 CAGGCCTTTGG-TTTGCAGGATAATGAGCGTTTCGCCGCTATCATACAAA 400
||.|.|||.|| .|||| .||.||||||||.||.||.||||||||.||||
RBAM_008550__ 466 CAAGACTTCGGCCTTGC-TGACAATGAGCGCTTTGCAGCTATCATTCAAA 514
BSNT_01411 401 CGGGTTATCCTGACGAGGCGCCGGAAGTGAAAAAACGCACACCGATCCGC 450
||||.|||||.||.||...|||..|.|.||||.||||.||.||| ||
RBAM_008550__ 515 CGGGCTATCCGGATGAACAGCCTAAGGCGAAAGAACGGACGCCG----GC 560
BSNT_01411 451 GA----CCGGTTCACTGAAATGTAA 471
.| ||.|||.||.|||.|||||
RBAM_008550__ 561 AAAAAGCCTGTTTACCGAACTGTAA 585
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