Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01410 and RBAM_008540

See Amino acid alignment / Visit BSNT_01410 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:07
# Commandline: needle
#    -asequence dna-align/BSNT_01410___yfhB.1.9828.seq
#    -bsequence dna-align/RBAM_008540___yfhB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01410___yfhB-RBAM_008540___yfhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01410___yfhB-RBAM_008540___yfhB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01410___yfhB
# 2: RBAM_008540___yfhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 934
# Identity:     620/934 (66.4%)
# Similarity:   620/934 (66.4%)
# Gaps:         101/934 (10.8%)
# Score: 1917.5
# 
#
#=======================================

BSNT_01410___      1 ATGAAAGAAGCAGAGGTATTAAAATATGAAGCATTT----ACAAGCAGTC     46
                     ||||||.|.|||...||.||.|||||||||||.|||    |.|     |.
RBAM_008540__      1 ATGAAACAGGCAACCGTGTTTAAATATGAAGCGTTTTCCGATA-----TT     45

BSNT_01410___     47 CCGGCAAA----GGAAACCCCGCAGGCGTCGTTTTGCAGGGAGACGATTA     92
                     ||||   |    |||||.||.||.||..||||.||..|.|||||.|||||
RBAM_008540__     46 CCGG---ATTTGGGAAATCCAGCGGGAATCGTCTTTAACGGAGATGATTA     92

BSNT_01410___     93 TACGGAAGACGAGATGCAGATCATAGCTGAACGTGCCGGGTATTCA--GA    140
                     |.|.||.||.|||||||||||.||.||.|||...||.|||||  ||  ||
RBAM_008540__     93 TTCAGATGAAGAGATGCAGATGATCGCCGAAATGGCAGGGTA--CAATGA    140

BSNT_01410___    141 AACCTCCTTTATCCGAAAAAGC-GAGTCGGCCGATCTTGAAC-TCCGTTA    188
                     ||||||.|||.||.|.|||||| ||| ..||||||| ||..| ||||.||
RBAM_008540__    141 AACCTCTTTTCTCTGTAAAAGCGGAG-AAGCCGATC-TGCGCATCCGCTA    188

BSNT_01410___    189 CTTTACCCCTGGACACGAAATGAATTTGTGCGGTCATGCGACAGTTGCTT    238
                     .|||||.||.||.||||||||||||||.|||||.|||||.||.||.||.|
RBAM_008540__    189 TTTTACACCCGGCCACGAAATGAATTTATGCGGACATGCTACCGTCGCCT    238

BSNT_01410___    239 CTCTTTACGCATTATGTGAGAAAGGAATGCTGGAGAGC-GGTAAAACGTA    287
                     ||||||||||||||..|||.||.||||.|||..|| || |.|.|.||.||
RBAM_008540__    239 CTCTTTACGCATTAATTGAAAAGGGAAGGCTTCAG-GCTGATCAGACATA    287

BSNT_01410___    288 -CAGCATCCAAACGAAAGCGGGTATCCTGCCTGTGAA----GATTTCTGA    332
                      || .||..||||.|||||.||.||.||.||.|..||    |    ||||
RBAM_008540__    288 TCA-AATTGAAACAAAAGCCGGCATTCTTCCCGCAAAAGCCG----CTGA    332

BSNT_01410___    333 AAAAGATGGCCGCATTCATATCACGCTTGAACAGGCCTCTCCGCAATTCA    382
                     |..|.|.|||||..|..|.|||||.||.||||||||..|.||||||||..
RBAM_008540__    333 ACGAAACGGCCGGGTATACATCACACTCGAACAGGCTCCCCCGCAATTTC    382

BSNT_01410___    383 AACCATTTACAGGCGATCGGA-AAAAACTTGCGGACGCACTGGGTATCAC    431
                     ..||.|||||.||||| |..| ||||.|||||.|.|.|.||.||.||.||
RBAM_008540__    383 TGCCGTTTACGGGCGA-CAAAGAAAAGCTTGCCGCCTCGCTCGGGATTAC    431

BSNT_01410___    432 CGATGAAGATTTTCATGAAGACCTTCCGATTGTGTTTGG--CAGCACTGG    479
                     .|.|||.||||||||....|..||.||||||||.|..||  ||  ||.||
RBAM_008540__    432 GGCTGAGGATTTTCACAGCGGGCTGCCGATTGTTTACGGATCA--ACGGG    479

BSNT_01410___    480 GATATGGACAGCCATCGTTCCGCTTAAATCATTGGAGGCTTCCAAAAAAA    529
                     |||.||||||...||.||||||||.|.||||.|..|.||.||....||.|
RBAM_008540__    480 GATCTGGACACTGATTGTTCCGCTGAGATCACTTAAAGCATCACGGAATA    529

BSNT_01410___    530 TGGTGCCAGATAACAAACAATTTCCGGAAGTGTTAGTT-----GATCTGC    574
                     |||||||.||.|||..||||||.||     .|.||.||     |||||.|
RBAM_008540__    530 TGGTGCCGGACAACGCACAATTCCC-----CGCTATTTTGCGCGATCTTC    574

BSNT_01410___    575 CAAAAGCTTCAGTCCATCCGTTTACCTTTGAAACCGTCCATCCCGACAGC    624
                     |.|||||....||.|||||||||.|....||||||||.|||||.||.||.
RBAM_008540__    575 CGAAAGCGAGCGTTCATCCGTTTTCTCGGGAAACCGTTCATCCGGAAAGT    624

BSNT_01410___    625 GACCTGCACGGGCGCCACTTTTCATCCCCGTATTCGGGAACGATTGAAGA    674
                     ||.||||||||.|||||.|||||.|||||.|..||.|||||||..|||||
RBAM_008540__    625 GATCTGCACGGACGCCATTTTTCTTCCCCTTTCTCCGGAACGACCGAAGA    674

BSNT_01410___    675 CCCCGTGACCGGCACAGCATCCGGCGTGATGGGGGCTTATATGAAACATT    724
                     .|||||.||.||.||.||.||.|||||.||||..||.||||||...||.|
RBAM_008540__    675 TCCCGTCACGGGAACCGCTTCAGGCGTCATGGCAGCCTATATGCGGCAAT    724

BSNT_01410___    725 ATGG------CAATGCCGAGCAGCATAAAT---TTATCATTGAACAAGGG    765
                     |.||      |.|.||||         |||   |.|..||||||||.||.
RBAM_008540__    725 ACGGAGGCTCCGAAGCCG---------AATGCCTCACGATTGAACAGGGC    765

BSNT_01410___    766 CAGGAAATTGGAAAAGATGGAAAAGTGGAGATCGAAATGAACGAAGCCGG    815
                     ||||||||.||.|||||.|||||||||||.|||   |.||.||    |||
RBAM_008540__    766 CAGGAAATCGGGAAAGACGGAAAAGTGGAAATC---AGGATCG----CGG    808

BSNT_01410___    816 -------CGGCCATGTGAAAGTGAACATGACAGGAACAGCCGTTTACTCA    858
                            |||..|..||||..|.||.|||||.|||||.|||||.||..|.
RBAM_008540__    809 AGGAAAACGGAGAGATGAACATCAAGATGACGGGAACGGCCGTGTATGCC    858

BSNT_01410___    859 GAAACCCGTATTCTTAAATTCTAA----------    882
                     |||||    |.||   ||||.|.|          
RBAM_008540__    859 GAAAC----AATC---AATTTTCAGCTTCCGTAA    885


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01410 and RBAM_008540

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
