Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01395 and RBAM_008500

See Amino acid alignment / Visit BSNT_01395 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:06
# Commandline: needle
#    -asequence dna-align/BSNT_01395___yfiT.1.9828.seq
#    -bsequence dna-align/RBAM_008500___yfiT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01395___yfiT-RBAM_008500___yfiT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01395___yfiT-RBAM_008500___yfiT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01395___yfiT
# 2: RBAM_008500___yfiT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 564
# Identity:     404/564 (71.6%)
# Similarity:   404/564 (71.6%)
# Gaps:          48/564 ( 8.5%)
# Score: 1320.0
# 
#
#=======================================

BSNT_01395___      1 ATG--ACATCAGTCAAT-CTAAGCTACCCAATAGGAGAATACAAGCCGAG     47
                     |||  |.|.||   ||| ||.|||||.||.||.|||||.||..|||||..
RBAM_008500__      1 ATGGAAAAACA---AATCCTCAGCTATCCGATTGGAGAGTATCAGCCGGC     47

BSNT_01395___     48 GGAATCCATATC-GAAGGAGCAAAAAGATAAATGGATTCAAGTA--CTTG     94
                     .|||||.||.|| |..||| ||.|||.|..|||||| |||| ||  ||.|
RBAM_008500__     48 TGAATCGATTTCGGCCGGA-CAGAAACAAGAATGGA-TCAA-TACGCTCG     94

BSNT_01395___     95 AAGAAGTGCCGGCAAAATTGAAGCAAGCTGT-AGAGGGCATGACGGACAG    143
                     ||.|.|..|||||.|||.||||.|||||||| ||||.| |||.|||||||
RBAM_008500__     95 AACACGCTCCGGCCAAACTGAAACAAGCTGTCAGAGCG-ATGTCGGACAG    143

BSNT_01395___    144 CCAGCTTGACACACCGTACCGGGACGGTGGATGGACCGTTCGGCAAGTTA    193
                     .||||||||.||.||||||||.||.||.||||||||.||.||.|||||..
RBAM_008500__    144 TCAGCTTGATACGCCGTACCGCGAAGGGGGATGGACTGTCCGCCAAGTGG    193

BSNT_01395___    194 TTCATCATCTGGCTGACAGTCATATGAACAGCTATATTCGTTTTAAATTG    243
                     ||||.||||||||.|||||.||.||||||.||||||..||.|||||||||
RBAM_008500__    194 TTCACCATCTGGCGGACAGCCACATGAACGGCTATACCCGGTTTAAATTG    243

BSNT_01395___    244 AGCTTGACGGAAGA--GACACCGGCTATCCGTCCGTATGATGAAAAAGCA    291
                     |||||.|||| |||  || |||||..||||||||.|||||||||||||..
RBAM_008500__    244 AGCTTAACGG-AGAATGA-ACCGGAAATCCGTCCTTATGATGAAAAAGGC    291

BSNT_01395___    292 TGGTCGGAGCTAAAAGACTCGAAAACGGCAGATCCGAGCGGCT-CGCTTT    340
                     |||.|.||.||..|.||.||.|||||.||.|.| .|.|.||.| |||||.
RBAM_008500__    292 TGGGCCGATCTTCATGATTCCAAAACCGCCGCT-TGCGGGGATGCGCTTG    340

BSNT_01395___    341 CGCTTTTGCAGGAG-----CTTCACGGAAGATGGACGGCTCTGCTCCGCA    385
                     .|||.||     ||     ||.|||.||||||||.|.|||||..|.|||.
RBAM_008500__    341 AGCTGTT-----AGCGATCCTGCACAGAAGATGGGCCGCTCTTTTGCGCT    385

BSNT_01395___    386 CTCTGACGGATCAGCAATTTAAGCGCGGATTTTATCACCCTGATA-CAAA    434
                     |..|||||||..|.|||||.||.||...||..|..||.|||| || |.||
RBAM_008500__    386 CCATGACGGAAGACCAATTCAAACGGACATACTTCCATCCTG-TATCTAA    434

BSNT_01395___    435 GGAGATCATTACCCTGGAGAACA--CGCTCGGCCTGTATGTCTGGCACTC    482
                     .||||...||||.|||  |||||  |||||||.||.|||||.||||||||
RBAM_008500__    435 AGAGACGGTTACGCTG--GAACAAGCGCTCGGGCTATATGTTTGGCACTC    482

BSNT_01395___    483 ---ACATCACCATATCGCTCATATTACGGAGCTTTCTAGACGGATGGGGT    529
                        |||||||   |||||.||||||||.||||||||..|.||||||||.|
RBAM_008500__    483 TGAACATCAC---ATCGCCCATATTACTGAGCTTTCCCGGCGGATGGGCT    529

BSNT_01395___    530 G------GTCTTAA    537
                     |      ||||||.
RBAM_008500__    530 GGCATCTGTCTTAG    543


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