Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01389 and RBAM_008450

See Amino acid alignment / Visit BSNT_01389 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:05
# Commandline: needle
#    -asequence dna-align/BSNT_01389___padR.1.9828.seq
#    -bsequence dna-align/RBAM_008450___padR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01389___padR-RBAM_008450___padR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01389___padR-RBAM_008450___padR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01389___padR
# 2: RBAM_008450___padR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 560
# Identity:     431/560 (77.0%)
# Similarity:   431/560 (77.0%)
# Gaps:          19/560 ( 3.4%)
# Score: 1649.0
# 
#
#=======================================

BSNT_01389___      1 ATGAGAGTATTAAAATACGCCATATTAGGGCTTTTGCGAAAAGGCGAATT     50
                     ||||||.|.|||||.|||||.||.||||||||||||||||||||||||||
RBAM_008450__      1 ATGAGAATTTTAAAGTACGCGATTTTAGGGCTTTTGCGAAAAGGCGAATT     50

BSNT_01389___     51 GAGCGGATACGATATTACGAGTTATTTTAAAGAGGAGCTCGGCCAATTTT    100
                     |||||||||.|||||..||||.|||||||||||.|||||||||||.||||
RBAM_008450__     51 GAGCGGATATGATATATCGAGCTATTTTAAAGAAGAGCTCGGCCAGTTTT    100

BSNT_01389___    101 GGAGCGCCAAACACAGCCAGATTTATCCCGAGCTCAAAAAGCTGACGGAT    150
                     |||||||.||.|||||||||||||||||.||..|.|||||.|||||||.|
RBAM_008450__    101 GGAGCGCAAAGCACAGCCAGATTTATCCGGAATTAAAAAAACTGACGGCT    150

BSNT_01389___    151 GAAGGGTTTATTACGTTCCGGACAACGATTCAAGGCACGAAGCTGGAGAA    200
                     ||.||.|||||||||||.||.||..||||||||||.||||||||.|||||
RBAM_008450__    151 GAGGGATTTATTACGTTTCGCACTGCGATTCAAGGAACGAAGCTTGAGAA    200

BSNT_01389___    201 AAAGATGTACACCCTGACAGACAACGGAAAACAGGAGCTTCATGCCTGGC    250
                     |||.||||||||.|||||.|||||.|||.|.|.|||||||..||||||||
RBAM_008450__    201 AAAAATGTACACGCTGACTGACAAGGGAGAGCTGGAGCTTGCTGCCTGGC    250

BSNT_01389___    251 TGATCCGCCACCAG--CCGATACCCGAGACGGTGAAGGATGAATTTATGC    298
                     |||  ||..|..||  |||||.||.||.|||||.||||||||||||||||
RBAM_008450__    251 TGA--CGAAAAAAGACCCGATTCCGGAAACGGTCAAGGATGAATTTATGC    298

BSNT_01389___    299 TGAAGGCTTATTTTATTTCTTCTCTATCGCGGCAGGAGGCTTCTGATTTA    348
                     |||||||||||||.||.||..||.|..|||.|.|.||.||...|||..||
RBAM_008450__    299 TGAAGGCTTATTTCATCTCAGCTTTGACGCAGGAAGAAGCGGATGAGCTA    348

BSNT_01389___    349 TTTACAGACCAGCTTCAAAAACGCAAGGCTAAGCTGTCCGATCTGCAGGA    398
                     ||.||.||.|||||...|||.||.||||..||..|||||||||||.|..|
RBAM_008450__    349 TTCACCGATCAGCTCGTAAAGCGGAAGGAGAAATTGTCCGATCTGGAAAA    398

BSNT_01389___    399 AAGCTATGAAAAGCTTATGGCTTC--------AGCAAAGCCGATGTCGTT    440
                     .||.|||.||.|.||.|||.|.||        ||    ||.||| ||.||
RBAM_008450__    399 CAGTTATCAAGAACTGATGACATCGTCCGCGGAG----GCGGAT-TCTTT    443

BSNT_01389___    441 TTCTTCACCGGACTTCGGCCACTATCTTGTGCTGACGAAAGCGCTGGAGC    490
                     ||||||.||.||.||||||||.|||||.||||||||.||||||||.||||
RBAM_008450__    444 TTCTTCTCCTGATTTCGGCCATTATCTCGTGCTGACAAAAGCGCTTGAGC    493

BSNT_01389___    491 GGGAGAAAAATTACGTTTCTTGGCTGGAATCAATTTTAGCTATGAT-AGA    539
                     ||||....|||||..||||.|||||.|||...|||||.|||.|.|| |.|
RBAM_008450__    494 GGGAACGGAATTATATTTCCTGGCTTGAAGATATTTTGGCTCTCATCAAA    543

BSNT_01389___    540 TAAGGATTAA    549
                     .|||.||.| 
RBAM_008450__    544 AAAGCATAA-    552


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