Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02052 and RBAM_008440
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:45
# Commandline: needle
# -asequence dna-align/BSNT_02052___ctaO.1.9828.seq
# -bsequence dna-align/RBAM_008440___ctaO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02052___ctaO-RBAM_008440___ctaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02052___ctaO-RBAM_008440___ctaO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02052___ctaO
# 2: RBAM_008440___ctaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1036
# Identity: 652/1036 (62.9%)
# Similarity: 652/1036 (62.9%)
# Gaps: 161/1036 (15.5%)
# Score: 1951.0
#
#
#=======================================
BSNT_02052___ 1 TTGGAGAATACAAGAGATTC---TGCAGC-CATATCTGAAACA------- 39
|.|| |.|| |||||| ||.| .|.||||
RBAM_008440__ 1 -----------ATGA-ACTCAAATGCAGCACAGA--CGGAACAGCCGATG 36
BSNT_02052___ 40 AAATACATAA---AAGCTTCGCACCGGGTAACCATTTACGATTTTATCAA 86
|| .||||| || |||||.|.||..|..|.||.|||||||.
RBAM_008440__ 37 AA--GCATAACGGAA-------ACCGGATGACGGTCAAGGACTTTATCAT 77
BSNT_02052___ 87 ACTTGCAAAGCCCGGCATTATCATATCAAACTCGATAGCAGCCTTCGGCG 136
.|||||.||.||.||.||||||||.|||||.||..|.||.||.||.||||
RBAM_008440__ 78 TCTTGCCAAACCGGGGATTATCATCTCAAATTCACTCGCGGCATTGGGCG 127
BSNT_02052___ 137 GGTTTTGGATCGC---GTTTGCAAGCG-CAGAAAAAACG----------- 171
|.||||||||||| |.|| || | ||||||..|||
RBAM_008440__ 128 GATTTTGGATCGCATGGATT-CA---GTCAGAAAGGACGGGCGGAGGGCC 173
BSNT_02052___ 172 -------TTAACCGGCTTGGCTTTTTTGATGACAATGGTAACAGCAATGT 214
||..|||.|.||||..|| ||.|||.
RBAM_008440__ 174 CGGTATATTTGCCGCCATGGCGGTT------------------GCCATGA 205
BSNT_02052___ 215 TGGGAACCGCGTTTGTGATGGCTTCCGGCACTGTCTATAACAACTATTTT 264
|.|||||.|||||.||.|||||.||..|||||||.|.|||.||||.||||
RBAM_008440__ 206 TCGGAACGGCGTTGGTCATGGCATCAAGCACTGTTTTTAATAACTTTTTT 255
BSNT_02052___ 265 GA--TCGGCATATGGACGCAAAAATGGCACGCACTCGCAGCAGGGCCTCG 312
|| .|||| |||||||||||||||||.||.||.||||.|.|.|||...
RBAM_008440__ 256 GACCGCGGC--ATGGACGCAAAAATGGCGCGAACCCGCACCCGCGCCAGC 303
BSNT_02052___ 313 GTCACAGGGAAAAT---GCCGCCAGCCATGATCTT----AACATATGGCT 355
|||||.||.||||| ||||||.|.|||||||.| ..||.|||.||
RBAM_008440__ 304 GTCACGGGAAAAATACCGCCGCCGGTCATGATCCTGTACGGCACATGCCT 353
BSNT_02052___ 356 CTGTTTTAGGGATCGCAGGCCTTGC--------CATGCTTTATTCCCTCA 397
|.| |||| ||| |||||||..|||.||.|
RBAM_008440__ 354 CGG----------CGCA-----TGCGGATTCATCATGCTTGCTTCGCTTA 388
BSNT_02052___ 398 ATCCATTAACGGCCTATCTCGG---ACTGGCCGCCTTTATTTTT----TA 440
||..|.|.||.|||..|||.|| |||.|| |||||| ||
RBAM_008440__ 389 ATGTACTGACCGCCGTTCTTGGGCTACTTGC-------ATTTTTGCTGTA 431
BSNT_02052___ 441 TGCGATCATCTATACGGTATGGGTGAAACGAACGTCTGTGTGGAGCACAT 490
|||..||.|.||||||.|.|||.|.|||.||...||.||.|.||||||||
RBAM_008440__ 432 TGCTGTCGTTTATACGCTTTGGTTTAAAAGACATTCCGTCTTGAGCACAT 481
BSNT_02052___ 491 TTGTCGGGAGCTTCCCAGGAGCTGCGCCGCCATTGATGGGGTATTGTGCC 540
|||||||.|||||.||.||.||.||.|||||.||.||.||.|||||.||.
RBAM_008440__ 482 TTGTCGGCAGCTTTCCCGGGGCGGCTCCGCCTTTAATCGGTTATTGCGCG 531
BSNT_02052___ 541 GTAACCGGTGAC-TTCAGTATGACAGCAGTGCTGTTGTACACGATTATGT 589
.|.|||||..|| ||.| ||||.|.||..|..||||.|||.|||||||||
RBAM_008440__ 532 CTCACCGGGTACATTGA-TATGCCCGCGATTTTGTTATACGCGATTATGT 580
BSNT_02052___ 590 TTCTGTGGCAGCCGCCGCATTTTTGGGCGATTGGGATAAGACGCAAAGAG 639
||.|||||||||||||||||||.|||||||||||.||.||.||.||.||.
RBAM_008440__ 581 TTTTGTGGCAGCCGCCGCATTTCTGGGCGATTGGAATCAGGCGAAAGGAA 630
BSNT_02052___ 640 GAATATCGCGCTGCTGGCGTTCCGCTCTTGCCAGTAGTCAAAGGCAATCA 689
||.|||||.||.||.|||.|||||||.|||||..|..|.||||||||.|.
RBAM_008440__ 631 GAGTATCGTGCCGCCGGCATTCCGCTTTTGCCGATCATAAAAGGCAACCG 680
BSNT_02052___ 690 TGTAACAAAAATAAAAATGATGCAATATATTGCCGTCCTG-GTGCCGGTC 738
.|..|||||||||||||||.|||..||||.||||||.||| .|| ||||.
RBAM_008440__ 681 CGCCACAAAAATAAAAATGCTGCGCTATACTGCCGTTCTGACTG-CGGTT 729
BSNT_02052___ 739 ACGCTATTATTTCCTTTCTCTCTAGGCACCGGCCATATAAGCCCATTTTA 788
.||||..|..|||||.|.|.|.||| |..|.|||||.|||||
RBAM_008440__ 730 TCGCTGCTCGTTCCTCTTTATATAG---------ACGTCAGCCCGTTTTA 770
BSNT_02052___ 789 TTTCTTAGCCGCCTTGGTTCTCGGAGGCATATGGATCAAAAAAAGCATCA 838
|..|....||||..|..|.|||||.|.|||.|||.|..|....|||.|||
RBAM_008440__ 771 TACCGCGTCCGCTCTCCTGCTCGGGGCCATCTGGCTGTACCGGAGCGTCA 820
BSNT_02052___ 839 AAGGATTCAAAACAGAC----GATGACGTGAAGTGGGCAAAGGATATGTT 884
||||.|| .|||.| ||||||..|.|.|||.|.||||..|||||
RBAM_008440__ 821 AAGGTTT----TCAGGCGGCGGATGACACGCAATGGTCGAAGGGGATGTT 866
BSNT_02052___ 885 TGTCTACTCGCTTATTTATTTTTGCTTGC-TGTTCTTCATCATGATGATC 933
|.|.||.|||.||.|.|||||..|..||| |.||||| ||..|.|||...
RBAM_008440__ 867 TTTTTATTCGATTGTGTATTTCAGTCTGCTTTTTCTT-ATTTTAATGGCT 915
BSNT_02052___ 934 GATTCATTTATGA---TGTTTCTGATCAGA---TGA 963
|||||.|||||.| .|.||| ||||| |.|
RBAM_008440__ 916 GATTCGTTTATCAATGCGGTTC---TCAGAACGTAA 948
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