Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01369 and RBAM_008430

See Amino acid alignment / Visit BSNT_01369 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:05
# Commandline: needle
#    -asequence dna-align/BSNT_01369___yfiE.1.9828.seq
#    -bsequence dna-align/RBAM_008430___yfiE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01369___yfiE-RBAM_008430___yfiE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01369___yfiE-RBAM_008430___yfiE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01369___yfiE
# 2: RBAM_008430___yfiE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 887
# Identity:     634/887 (71.5%)
# Similarity:   634/887 (71.5%)
# Gaps:          58/887 ( 6.5%)
# Score: 2180.5
# 
#
#=======================================

BSNT_01369___      1 ATGACCAGCATTCATGAGGATAC-ACACATTGGCTATGCCAAACTCACAA     49
                     ||||||.||||||||.|.||||| .|| ||.||.||||.||||.|.||.|
RBAM_008430__      1 ATGACCGGCATTCATCAAGATACGGCA-ATCGGTTATGTCAAATTGACCA     49

BSNT_01369___     50 TTCGCAGTCTGGAGCGTTCGCTTCAG-TTCTACTGTAACGTCATCGGTTT     98
                     ||...|.|.||||.||.|||| ||.| ||.|||.|.||.||.|||||..|
RBAM_008430__     50 TTAAAAATATGGAACGCTCGC-TCGGCTTTTACCGGAATGTAATCGGCCT     98

BSNT_01369___     99 TCAAGTCTTAAAAAAGACGGATCG----CCAAG-CTGAATTAACGGCTGA    143
                     |||||||.|.....||||.|||||    .|||| |||     .|.||.||
RBAM_008430__     99 TCAAGTCATCTCGCAGACAGATCGTTCAGCAAGACTG-----TCAGCAGA    143

BSNT_01369___    144 CGGGAAACGCGTACTGCTTATTCTTGAAGAAAATCCGAGCGCTGTCGTCT    193
                     |||.||||||||.|||||..|.||||||||||||||..||||.|||||..
RBAM_008430__    144 CGGAAAACGCGTCCTGCTGGTGCTTGAAGAAAATCCAGGCGCCGTCGTTC    193

BSNT_01369___    194 TGCCTGAACGGTCTGTGACAGGTCTTTATCACTTTGCGATTCTTCTTCCG    243
                     ||||.||.||||||||.||.||.|||||.||.||.|||||.|||||.||.
RBAM_008430__    194 TGCCGGAGCGGTCTGTCACCGGCCTTTACCATTTCGCGATACTTCTGCCT    243

BSNT_01369___    244 GACAGGAAAGAACTTGGGATCGCGCTCGCCCGCCTGATTGAACACGGCAT    293
                     |||.||||||||||.||.|||||..|.|||.|.|||||||||.|||||||
RBAM_008430__    244 GACCGGAAAGAACTCGGCATCGCATTGGCCAGGCTGATTGAAAACGGCAT    293

BSNT_01369___    294 TGCTATCGGACATGGAGACCATGCTGTCAGCGAAGCGCTTTACCTGTCTG    343
                     .||..||||.||.||.||.||.||.|||||.||.||.|||||||||||||
RBAM_008430__    294 CGCGCTCGGTCAGGGGGATCACGCGGTCAGTGAGGCTCTTTACCTGTCTG    343

BSNT_01369___    344 ATCCTGACGGAAACGGCATTGAAATGTACGCTGACCGCCCCCGCAGCACA    393
                     ||||.|||||.|||||.||||||||.|||||.||.||.|||||||||||.
RBAM_008430__    344 ATCCGGACGGCAACGGTATTGAAATATACGCCGATCGTCCCCGCAGCACG    393

BSNT_01369___    394 TGGCAGCGTGATCGGGAAGGAAACTACGTCATGACGACAACCG----CTG    439
                     ||||..||.|||...||.||.||.||.||||||    |||.||    |.|
RBAM_008430__    394 TGGCGCCGCGATGCAGAGGGCAATTATGTCATG----CAAACGGCGCCCG    439

BSNT_01369___    440 TTGACATTGAGGGCCTTCTGGAAGAGGCAGGAGATGAGCGGAAAA--CAT    487
                     |.||..|.||.||.|||.|||||||.||.||||.|||.|||||||  |.|
RBAM_008430__    440 TCGATGTGGACGGGCTTTTGGAAGAAGCCGGAGCTGAACGGAAAAGCCGT    489

BSNT_01369___    488 CGCTTCC--GAACGATACAATCATCGGACACATTCATCTGCATATCAGTG    535
                     |   |||  |||.|| ||..|.|||||.|||||.|||||.|||.|.|..|
RBAM_008430__    490 C---TCCCAGAAGGA-ACTGTTATCGGCCACATCCATCTTCATGTGACGG    535

BSNT_01369___    536 ATTTGAAAGAAGCAAAGGCGTTTTATACAGATGTACTGGGCTTTGACATT    585
                     |.||..|.|||||.||.||||||||.||.|||.|.||.||.|||||.|||
RBAM_008430__    536 ACTTACAGGAAGCCAAAGCGTTTTACACCGATATTCTCGGTTTTGATATT    585

BSNT_01369___    586 GTCGGAAACTATGCGGGCATGTCCGCCCTCTTCGTTTCAGCCGGGGGGTA    635
                     |||||.||.||.||||||||||||||.||.||.||||||||.||.|||||
RBAM_008430__    586 GTCGGCAATTACGCGGGCATGTCCGCTCTGTTTGTTTCAGCGGGAGGGTA    635

BSNT_01369___    636 CCACCATCATATCGGCTTAAACATTTGGGCGGGAAGAAATGCGCCGCCTA    685
                     .||||||||.|||||..|.||.||.|||||.||||.|.||||||||||.|
RBAM_008430__    636 TCACCATCACATCGGTCTGAATATATGGGCCGGAAAACATGCGCCGCCGA    685

BSNT_01369___    686 AACCGACAAATGCCAGCGGACTAGATTATTATACTGTTGTCCTGCCTCAC    735
                     |||||..||||||.|||||.||.||||||||.||..|.|..|||||.||.
RBAM_008430__    686 AACCGGGAAATGCAAGCGGGCTGGATTATTACACCATCGCGCTGCCGCAT    735

BSNT_01369___    736 CAAGAGGAGCTGGATTT----GGTGGCAA--------ACCGAGTCAAACA    773
                     |||.|.||||||    |    .|||.|||        ||||        |
RBAM_008430__    736 CAAAAAGAGCTG----TCACGTGTGACAAAAGCGCTGACCG--------A    773

BSNT_01369___    774 TGCCGGGTATTCGATTGAAGAGACGGAAAACAGC--TTTCGTGTGAAAGA    821
                     ||||||.|.|..|||.|||||.|..|||.|..||  .|||  ||.|||||
RBAM_008430__    774 TGCCGGCTTTGAGATCGAAGAAAAAGAAGAGGGCGTATTC--GTCAAAGA    821

BSNT_01369___    822 CCCTGTTTCCGGCGCCTATATTACATTTGTGATTTAA    858
                     ||||||.||.||.||..||||..|||||....|.|||
RBAM_008430__    822 CCCTGTATCAGGGGCGGATATCGCATTTACACTGTAA    858


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01369 and RBAM_008430

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
