Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01351 and RBAM_008340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:03
# Commandline: needle
# -asequence dna-align/BSNT_01351___acoR.1.9828.seq
# -bsequence dna-align/RBAM_008340___acoR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01351___acoR-RBAM_008340___acoR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01351___acoR-RBAM_008340___acoR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01351___acoR
# 2: RBAM_008340___acoR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1952
# Identity: 1283/1952 (65.7%)
# Similarity: 1283/1952 (65.7%)
# Gaps: 277/1952 (14.2%)
# Score: 4034.0
#
#
#=======================================
BSNT_01351___ 1 ATGA-----ATTCGGTCCCAAACGATTTGCAAACCTGGAAACGTTTTGTG 45
|||| |||||| ||.|||||..||||||||||.||.||||||
RBAM_008340__ 1 ATGAATGTCATTCGG-----AATGATTTTAAAACCTGGAAGCGCTTTGTG 45
BSNT_01351___ 46 AAAGACGGTGTGCTTGACGAAGCCCG-ATTAAGAAAACGGATTGCAGAGT 94
|||||.||.||||||||.|||.|||| |||.|| ||.|||.|.||.|..|
RBAM_008340__ 46 AAAGAAGGCGTGCTTGATGAATCCCGTATTCAG-AAGCGGGTGGCCGCCT 94
BSNT_01351___ 95 CATGGCATCGCTGCAAAAAAGCTGAGGTCAATCCTTATTTAGAAAAAGGC 144
|||||||.||||||||||||||.||.||.||.||||||.|.|||||.||.
RBAM_008340__ 95 CATGGCACCGCTGCAAAAAAGCCGACGTTAACCCTTATCTCGAAAAGGGG 144
BSNT_01351___ 145 CCGAAGGT-TTTACAGCAAACGGAGCTGGATCA---------GCAGTCAA 184
|||||.|| .|..|.||| ||||| ||||.|..
RBAM_008340__ 145 CCGAATGTAATGCCGGCA----------GATCATTTAGAAAGGCAGGCCG 184
BSNT_01351___ 185 AAAAACATTCATTCTTCTTGACGACCGCAAAGCCTTACCTCGAAAAACTG 234
||||.|||.|.||.||.||..||.||.|||.||||.|....||||.|.||
RBAM_008340__ 185 AAAAGCATGCGTTATTTTTAGCGGCCTCAACGCCTCATGCAGAAAGAATG 234
BSNT_01351___ 235 CTGCCTGCCATAAAA-----------GAAATGGAAATGATGGCGCTGTTA 273
|||| ||||||||||||||||..||..|.
RBAM_008340__ 235 -----------AAAACGGCGATGCGGGAAATGGAAATGATGGTTCTTCTG 273
BSNT_01351___ 274 ATTGATTCAGACGGTGTTGT---TTTGGCATTGGACGGCCATTCCCGCGC 320
||||||||.|||||.||||| || ||.|.|||||||| |||||||
RBAM_008340__ 274 ATTGATTCTGACGGCGTTGTCCATT---CAGTTGACGGCCA--CCCGCGC 318
BSNT_01351___ 321 GC---TCTATGAAGCCAAACGCATCAACTTTGTCGAAGGGGCATGCTGGA 367
.| || |||||||.||.||||||||.||..|..||||.||..||||||
RBAM_008340__ 319 ACCATTC-ATGAAGCGAACCGCATCAATTTCTTAAAAGGCGCCCGCTGGA 367
BSNT_01351___ 368 CGGAAACGGCTGTCGGAACAAATGCGATTGGCACGGCAC----TCCACAT 413
||||||||||.|||||.||.||||||||.||.|||||.| |.||.||
RBAM_008340__ 368 CGGAAACGGCCGTCGGCACGAATGCGATCGGGACGGCTCTTTATACAAAT 417
BSNT_01351___ 414 TAGCGAGCCGGTTGCGATACAAGGATCAGAGCATTACTCCATTGCTTCCC 463
||||||||...||||||.||.||.||.|||||.||..|.|||||.|
RBAM_008340__ 418 ----GAGCCGGTCATGATACACGGCTCTGAACATTATTCGCTCGCTTCTC 463
BSNT_01351___ 464 ATCTTTGGAACTGTTCAGCCGCTCCGATTCACCATGAGGATGGCAGCCTT 513
|||..||||.||||||.|||||.|||||.|...||||.||.||..|.||.
RBAM_008340__ 464 ATCAATGGAGCTGTTCCGCCGCGCCGATCCGTTATGAAGACGGGCGGCTG 513
BSNT_01351___ 514 GCGGGTGTGATTGACATATCGTGTCCGGCGGCAGGCGCTCATCCTCATAT 563
||||||||.|||||.||.||.||.||.||.||..|||||||.||...|||
RBAM_008340__ 514 GCGGGTGTCATTGATATTTCCTGCCCCGCCGCCCGCGCTCAGCCGTTTAT 563
BSNT_01351___ 564 GCTCGGTATTGCCACTGCGATCGCCTATGCAGCTGAACGGGAACTCGCAG 613
||||||.||||||.|..|.||.||.|||.|.||.||||||||.||.|| .
RBAM_008340__ 564 GCTCGGAATTGCCTCCTCCATTGCTTATACGGCGGAACGGGAGCTTGC-C 612
BSNT_01351___ 614 CTAAAAGCCGTGA-------GAAAGAGCTCGAGCTGATCAGCCGTTTTGG 656
||||| || ||.|||.||.||..||||||||...||.|
RBAM_008340__ 613 CTAAA------GATCAAAATGACAGAACTTGACATGATCAGCAAGTTCG- 655
BSNT_01351___ 657 AGAGAGGGCTGCATCCAGT-----GTGCCGATGGTGCTATGCAATACCAA 701
..||||| .|.||.|| |..|||||.|||||.|||||| .||
RBAM_008340__ 656 ---CCGGGCT-TACCCGGTCTCACGATCCGATCGTGCTTTGCAAT--GAA 699
BSNT_01351___ 702 ---------------GCAGCA---CATCATCAGTGCGAGCATACCGATTC 733
||.||| |.|| |.||.| ||||| ||
RBAM_008340__ 700 ATGAGCCGGGTTATCGCCGCAAGCCGTC--CCGTTC-AGCAT-----TT- 740
BSNT_01351___ 734 GAACCTCAATACCGG--ATTGGCAGGGCCGGCACCTGTATGAGCTGAAGG 781
|||||| ||..||.|.|| |||||..|||
RBAM_008340__ 741 ---------TACCGGACATACGCTGCGC------------GAGCTTGAGG 769
BSNT_01351___ 782 AACGGGGCT---AC-TCAATC-GAAAAAGCTGTCACCATAGGAG-ATGGC 825
|||.|||.| || ||||.| |...||||.| .||||| |.|||
RBAM_008340__ 770 AACAGGGATTTCACATCAAGCAGGCGAAGCGG------GAGGAGAACGGC 813
BSNT_01351___ 826 GGCACTTGTTTTTATCTTTCGGAACAAAAGA----AAAAGAAGGTGTTTC 871
..|||.||..|||||.|.|| ||||.|| |||||..||..|||.
RBAM_008340__ 814 TACACATGCGTTTATTTATC----CAAACGAGAAGAAAAGCCGGCTTTTA 859
BSNT_01351___ 872 GATTCAATGGAGTGATCGGGC-AAAGCGGCCG--ATCGCAAGCGATGCTG 918
.||||.||||.|.| .|.||| ||||| ||| |||.|.|...|||||.
RBAM_008340__ 860 TATTCCATGGTGCG-GCAGGCAAAAGC--CCGTCATCCCGACATATGCTT 906
BSNT_01351___ 919 ATGAACCTTGAACGTGCAGCTGCGGCA--GATGCAACGGTCTGTTTGTCG 966
..|.|.||.||.|.||..|| |.||| ||.|||||.||.|||.|..||
RBAM_008340__ 907 CAGCAGCTGGAGCTTGTCGC--CCGCACGGACGCAACCGTTTGTCTTACG 954
BSNT_01351___ 967 GGCGAAACTGGTACGGGAAAGGAAGTCGCGGCTCGCGCGCTTCATGAGAA 1016
||.|||||.||.|||||||||||.||.||.||.||.|||.|||||.|.||
RBAM_008340__ 955 GGAGAAACCGGGACGGGAAAGGAGGTTGCCGCCCGGGCGATTCATAACAA 1004
BSNT_01351___ 1017 CAG-----TGAGAGACGGCACGGTCCGTTTATTGCTGTCAATTGCGGAGC 1061
||| .||.|.||||| ||||||||.||.||||||||||||||
RBAM_008340__ 1005 CAGCTCCAGGAAAAACGGC-----CCGTTTATCGCCGTCAATTGCGGAGC 1049
BSNT_01351___ 1062 GATTCCGTCTGATTTGATTGAAAGCGAACTATTCGGATATGCAGAGGGCG 1111
|.|.||.....|..||||||||||||||||.|||||.||..|.||.||||
RBAM_008340__ 1050 GGTCCCCGAAAAGCTGATTGAAAGCGAACTGTTCGGCTACTCGGAAGGCG 1099
BSNT_01351___ 1112 CTTTTACGGGAGCGAAACGAAATGGCTATAAAGGCGCCTTTCAAAAAGCG 1161
|.||.||.||.||.|||||.||.||..||||.|||||.||.||||||||.
RBAM_008340__ 1100 CCTTCACCGGGGCCAAACGGAAAGGACATAACGGCGCTTTGCAAAAAGCC 1149
BSNT_01351___ 1162 AATCAAGGCACATTATTTTTAGATGAAATCGGAGAAATTTCCCACTCGAT 1211
.||.|||||||..|.||..|.|||||||||||||||||.||.|||||.||
RBAM_008340__ 1150 GATAAAGGCACGCTTTTCCTCGATGAAATCGGAGAAATATCACACTCCAT 1199
BSNT_01351___ 1212 GCAGGTTGCGCTTTTACGGGTGCTTCAGGAACGCAAGATAACGCCAATCG 1261
||||||.||.||.|||||||||||.||||||||.||..|.||.||..|||
RBAM_008340__ 1200 GCAGGTCGCTCTGTTACGGGTGCTGCAGGAACGGAAAGTCACCCCGGTCG 1249
BSNT_01351___ 1262 GCGGGACGAAAGAAATTCCGGTTGATATCAGAGTTAT---TGCC-GCCAC 1307
|||||||.|||||.|||||.|||||.||||||.|.|| |||| .||||
RBAM_008340__ 1250 GCGGGACAAAAGAGATTCCCGTTGACATCAGAATCATCACTGCCACCCAC 1299
BSNT_01351___ 1308 ACATTGTGATTTACGCGAGCTTGCCGAAAACGGAAAAA--TCAGAGAGGA 1355
|| ||||.|..|..||||||.|| ||.|.||||| |.|||||.||
RBAM_008340__ 1300 AC----TGATCTGAGACAGCTTGTCG--AATGCAAAAAGCTGAGAGAAGA 1343
BSNT_01351___ 1356 CTTGTTTTACCGTCTTCATGTCTATCCAATTGAACTCCCTCCATTACGCG 1405
.||.||||||||.|||||.||||.|||.||..|.||||||||||||.|.|
RBAM_008340__ 1344 TTTATTTTACCGGCTTCACGTCTGTCCGATCCACCTCCCTCCATTAAGAG 1393
BSNT_01351___ 1406 ATCGCACCGAGGATA-TCCCGGACCTCT---TTGAGCACTACAAACAGAA 1451
|.||||||||.||.| |||||| ||||| |||| |.| .|||..
RBAM_008340__ 1394 AACGCACCGAAGACATTCCCGG-CCTCTTCCTTGA--ATT----TCAGCG 1436
BSNT_01351___ 1452 GAATC---ATTGGCCAGGCGAACTTCCTTCTGATTTTT--------GTAA 1490
.|||| ..||||..||.||.||||||..|||||||| .|||
RBAM_008340__ 1437 AAATCGCGGCTGGCGGGGGGAGCTTCCTGATGATTTTTTAGACCTATTAA 1486
BSNT_01351___ 1491 TGTGCTGAAGCAATGGAAGTGGCCGGGGAATATCCGTGAGCTGTTTAATG 1540
.|.|| .||||.|||||||||||||||.|.||..|||||||||
RBAM_008340__ 1487 AGAGC--------CGGAAATGGCCGGGGAATATCAGGGAATTGTTTAATG 1528
BSNT_01351___ 1541 TGTTTGAACGTCTTTCTATCAGATTTCCGGACGGCCGGCTGAGGGAT--G 1588
|.||||||||||||||..|||..||.||||||||.|||||| | |
RBAM_008340__ 1529 TATTTGAACGTCTTTCCGTCATGTTCCCGGACGGACGGCTG-----TCAG 1573
BSNT_01351___ 1589 AAC-------CGCTACCC-GCTTTACTGGAAGCCGCTGG------ATTGC 1624
||| |||..||| |||| |||||..|.|| |..|.
RBAM_008340__ 1574 AACGCCCCATCGCAGCCCTGCTT-----GAAGCGTCAGGTCTTAAAGAGG 1618
BSNT_01351___ 1625 CGGCC-AGCTCTGCAGAA----AAAAAGCCGGCTGCTGCCGGCGTGCTTA 1669
||||| || |||...||| ||.||| ||.|..||| |..
RBAM_008340__ 1619 CGGCCGAG-TCTTATGAACAGGAAGAAG-CGTCCCCTG---------TCT 1657
BSNT_01351___ 1670 CCTTTCGTGAGCAAATCCAAAAGGATATGATGATCAAAGCGCTTGAATCA 1719
||.|.||.|||||.||.||.||..|.||.||..|.||.||||||||||||
RBAM_008340__ 1658 CCATCCGGGAGCACATTCAGAAAAACATCATCGTAAACGCGCTTGAATCA 1707
BSNT_01351___ 1720 GCAAAAGGAAACGTCTCTCAAGCCGCAAAAATCAGCGGGATCCCCCGAAG 1769
||.||.||.||.|||.|.|..|||||.|||||...|||.|||||.||.||
RBAM_008340__ 1708 GCGAAGGGGAATGTCACGCTGGCCGCCAAAATGGCCGGAATCCCGCGGAG 1757
BSNT_01351___ 1770 CACTTTCTACAAACGCCTGAAAAAATTCAACTTGTCCGCTG---AATCAT 1816
|||.||.|||||||||||.|||||||||||..|..||||.| |||..|
RBAM_008340__ 1758 CACGTTTTACAAACGCCTCAAAAAATTCAAACTCACCGCCGGACAATTGT 1807
BSNT_01351___ 1817 AA 1818
||
RBAM_008340__ 1808 AA 1809
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