Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01349 and RBAM_008330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:03
# Commandline: needle
# -asequence dna-align/BSNT_01349___acoL.1.9828.seq
# -bsequence dna-align/RBAM_008330___acoL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01349___acoL-RBAM_008330___acoL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01349___acoL-RBAM_008330___acoL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01349___acoL
# 2: RBAM_008330___acoL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity: 999/1443 (69.2%)
# Similarity: 999/1443 (69.2%)
# Gaps: 129/1443 ( 8.9%)
# Score: 3252.5
#
#
#=======================================
BSNT_01349___ 1 ATGACATTAGCCATTATCGGCGGCGGACCTGCAGGCTATGCGGCTGCGGT 50
.|||||.|||||||||||||||||||.|||||.||.|||||.|||||.||
RBAM_008330__ 1 TTGACACTAGCCATTATCGGCGGCGGGCCTGCCGGATATGCAGCTGCCGT 50
BSNT_01349___ 51 TTCCGCGGCACAGCAGGGCAGAA-ACGTGCTGCTTATTGACAAAGGCAAG 99
..|.||.||.| |.||||.|||| |.||..|.||.||.||||||||...|
RBAM_008330__ 51 GACTGCCGCGC-GGAGGGGAGAAGAAGTCGTTCTGATCGACAAAGGGCCG 99
BSNT_01349___ 100 CTTGGAGGGACCTGCCTGAATGAAGGCTGCATCCCGACAAAGTCTTTGTT 149
||.|||||.||.||.||.|||||.||.|||||||||||||||||..|.||
RBAM_008330__ 100 CTCGGAGGCACTTGTCTCAATGAGGGGTGCATCCCGACAAAGTCGCTTTT 149
BSNT_01349___ 150 AGAAAGCGCAAACGTTCTTGATAAAATCAAGCATGCCGACAGCTTTGGAA 199
.||||||||.||.||.||.||||||||||.|||.||.||.|..||.||.|
RBAM_008330__ 150 GGAAAGCGCGAATGTGCTCGATAAAATCAGGCACGCAGATACATTCGGCA 199
BSNT_01349___ 200 TCGAACTTCCGGCAGGTGCGATAT--CAGTCGATTGGAGTAAAATGCAAA 247
|||||||.|||..| .|.|| ||.||.|||||......|||||..
RBAM_008330__ 200 TCGAACTGCCGCAA-----AACATTACACTCAATTGGGCCCGCATGCAGG 244
BSNT_01349___ 248 GCCGGAAACAACAGGTTGTCAGTCAGCTTGTCCAAGGCGTTCAGTACCTA 297
|.||.||||..||..|.|||||.|||||.||.||.||..||||.|||.||
RBAM_008330__ 245 GGCGCAAACGGCAAATCGTCAGCCAGCTCGTGCAGGGAATTCAATACTTA 294
BSNT_01349___ 298 ATGAAGAAAAATCAAATACAGGTTGTAAAG--------GGAACAGCCTCC 339
|||||...||||||.|| ||||| ||.|||||.||.
RBAM_008330__ 295 ATGAAAGCAAATCAGAT--------TAAAGTCATCAGCGGGACAGCTTCA 336
BSNT_01349___ 340 TTTCTTTCTGA-AAGAAAGCTCTTGATC---GAAGGAGAAAAAGG---AA 382
|||||..|.|| .|||.| |||.|| |||||||||..||| ||
RBAM_008330__ 337 TTTCTCACAGAGCAGACA----TTGCTCGTTGAAGGAGAAGGAGGCGCAA 382
BSNT_01349___ 383 AAGA-AATCAGAGAGGCGGACCAAGTATTGATTGCCTCCGGATCAGAGCC 431
|||| |.||.| ||.|||||.|...||||||||||.||||||||.||.||
RBAM_008330__ 383 AAGACATTCTG-GAAGCGGATCGGATATTGATTGCATCCGGATCTGAACC 431
BSNT_01349___ 432 AATCGAGCTGCCTTTCGCCCCGTTTGACGGCGAATGGATCCTCGACAGCA 481
....||||||||.||.|||||.|||||||||||.|||.|..|||||||||
RBAM_008330__ 432 GGCGGAGCTGCCGTTTGCCCCATTTGACGGCGATTGGGTGATCGACAGCA 481
BSNT_01349___ 482 AAGACGCGCTTTCTCTTTCCG-AGATTCCGTCTTCACTAGTCATTGTCGG 530
|||||||||||||| ||.|.| |.||.||.|||||.||..|.||||||||
RBAM_008330__ 482 AAGACGCGCTTTCT-TTACAGAAAATCCCTTCTTCTCTGCTTATTGTCGG 530
BSNT_01349___ 531 CGGCGGTGTCATCGGGTGTGAGTATGCAGGGCTGTT-----CGCCAGATT 575
.||.|||||.|||||.|||||.|.||| ||.|| .||| |.||
RBAM_008330__ 531 GGGAGGTGTGATCGGCTGTGAATTTGC----CTCTTTATTCAGCC-GGTT 575
BSNT_01349___ 576 GGGATCGAAGGTGACCATCATTGAAACAGCGGACCAGCTGATCCCGGCTG 625
...|.||||.|||||..|.||||||.|.||.||||.||||.|||||||.|
RBAM_008330__ 576 TAAAACGAAAGTGACGGTGATTGAATCGGCTGACCGGCTGCTCCCGGCAG 625
BSNT_01349___ 626 AAGACGAAGATATTGCCCGTCTTTTTCAGGAGAAACTTGAGGAAGA---C 672
||||||.|||.||.| |||.|.||||| |.|||..|||.|.| ||| |
RBAM_008330__ 626 AAGACGGAGAAATCG-CCGCCGTTTTC-GAAGACTCTTTAAG-AGACAGC 672
BSNT_01349___ 673 GGTGTCGAAGTGCATAC--------CTCATC--CAGATT-----AGAACG 707
||.|..||..|.||.|| |.|.|| |.|||| ||||.|
RBAM_008330__ 673 GGGGCTGATATTCAGACGAAAGCCGCCCTTCAGCGGATTGACAAAGAAAG 722
BSNT_01349___ 708 GGTGGATCAAACGGCCAAAACGGCAATATGG--AAAAG-CGGTCAGCGAG 754
| |||||.||..|.||| ||||| |||..| ||
RBAM_008330__ 723 G---------------AAAACCGCGGTGTGGACAAAAGACGGCAA---AG 754
BSNT_01349___ 755 AGTTTAAAACGAAGGCCGATTATGTGCTGGTGGCGATCGGCAGAAAACCC 804
|..||.|..|..||||.|||.|.||..||||.||.|||||.|||||.||.
RBAM_008330__ 755 AAATTGAGGCTCAGGCTGATCACGTTTTGGTTGCAATCGGGAGAAAGCCG 804
BSNT_01349___ 805 CGTCTTG-ACGGATTACAGCTTGAACAGGCCGGAGTTGAT----TTTTCT 849
||| ||| |.||.||..|.||.||.|||||||| .|| |.||||
RBAM_008330__ 805 CGT-TTGCATGGCTTGAATCTGGAGCAGGCCGG----CATCCGGTATTCT 849
BSNT_01349___ 850 CCAAAGGGCATTCCGGTGAATGGGCACATGCAGACGAACGTGCCTCATAT 899
||....||||||...||.||||..||.||||||||.||.|||||||||||
RBAM_008330__ 850 CCGCGCGGCATTGAAGTCAATGACCATATGCAGACCAATGTGCCTCATAT 899
BSNT_01349___ 900 TTACGCGTGCGGAGATGCTATAGGGGGCATTCAGCTCGCGCATGCCGCTT 949
.|||||.|||||.|||||....||.||.||.|||||||||||||||||..
RBAM_008330__ 900 ATACGCATGCGGCGATGCGGCCGGAGGAATGCAGCTCGCGCATGCCGCCA 949
BSNT_01349___ 950 TCCATGAGGGCATCATCGCTGCTTCTCATGCTTCCGGAAGGGATGTCAAA 999
|.|||||.||.||||..||.||..|.|||||.||.||||.||||..||||
RBAM_008330__ 950 TTCATGAAGGAATCACAGCCGCCGCGCATGCCTCGGGAAAGGATAGCAAA 999
BSNT_01349___ 1000 ATCAATGAGAAACAT---GTGCCGCGCTGCATCTATACGTCCCCAGAAAT 1046
.||||| |..||| |||||.|||||.||.|||||.||.||.|||||
RBAM_008330__ 1000 GTCAAT---ATGCATGCGGTGCCCCGCTGTATTTATACATCGCCGGAAAT 1046
BSNT_01349___ 1047 CGCGTGTATCGGAATGACAGAACGACAGGCAAGAAGA-ATATACGGCGAT 1095
.||...|.||||..||||.|||..||||||.|| ||| |.||||||.|||
RBAM_008330__ 1047 GGCCGCTGTCGGGCTGACGGAAACACAGGCGAG-AGAGACATACGGAGAT 1095
BSNT_01349___ 1096 GTGAAAATTGGCGAATTTCCTTTTTCCGCAAACGGCAAGGCGCTCATTAA 1145
||||||||.||.||||...|.|||||.||.|||||.||.|||.|.|||||
RBAM_008330__ 1096 GTGAAAATCGGAGAATGCTCATTTTCTGCTAACGGAAAAGCGTTAATTAA 1145
BSNT_01349___ 1146 ACAGCA----AGCGGAAGGAAAGGTCAAAATCATGGCTGAACCGGAATTC 1191
|||.|| .||||.| ||| |.||||||||.||.||||||||||||
RBAM_008330__ 1146 ACATCAGCATGGCGGCA--AAA--TGAAAATCATTGCCGAACCGGAATTC 1191
BSNT_01349___ 1192 GGCGAAATCGTGGGTGTCTCGATGATTGGCCCGGATGTAACCGAGCTCAT 1241
||.||||||||.||.||.||.|||||.||.|||||.||.||.||..|.||
RBAM_008330__ 1192 GGAGAAATCGTCGGCGTGTCAATGATCGGGCCGGACGTGACGGAATTGAT 1241
BSNT_01349___ 1242 CGGCCAAGCGG-CAGCGATCATGAATGGTGAGATGACGGCAGATATGGCG 1290
|||.||.|||| || .|||.|||||.|||||.||||||||.||||||.||
RBAM_008330__ 1242 CGGTCAGGCGGTCA-TGATGATGAACGGTGAAATGACGGCTGATATGTCG 1290
BSNT_01349___ 1291 GAGCATTTTATCGCCGCCCATCCGACTTTATCGGAAACATTGCATGAGGC 1340
|||||.||||||||.||.|||||||||.|.||.|||||..|.||.||.||
RBAM_008330__ 1291 GAGCACTTTATCGCGGCGCATCCGACTCTGTCAGAAACGCTTCAGGAAGC 1340
BSNT_01349___ 1341 GCTGTTAA---GCACGATCGGCCTTGCGGTACAT---GCATAA 1377
.|||.|.| .||| |||.||||||||.||| |.||||
RBAM_008330__ 1341 CCTGCTGAATGTCAC---CGGACTTGCGGTGCATTCCGTATAA 1380
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