Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01340 and RBAM_008280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:02
# Commandline: needle
# -asequence dna-align/BSNT_01340___yfjN.1.9828.seq
# -bsequence dna-align/RBAM_008280___yfjN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01340___yfjN-RBAM_008280___yfjN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01340___yfjN-RBAM_008280___yfjN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01340___yfjN
# 2: RBAM_008280___yfjN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1005
# Identity: 860/1005 (85.6%)
# Similarity: 860/1005 (85.6%)
# Gaps: 27/1005 ( 2.7%)
# Score: 3828.0
#
#
#=======================================
BSNT_01340___ 1 ATGAAAGGATTTGAATGTATTATGACAGATAATTTCTGGCGTGAATTGCC 50
||||||||||||||||||||||||||.||
RBAM_008280__ 1 ---------------------ATGACAGATAATTTCTGGCGTGAATTACC 29
BSNT_01340___ 51 ACGGCCATTTTTTGTACTGGCACCAATGGAAGATGTGACAGATGTTGTTT 100
|||||||||||||||||||||||||||||||||||||||.|||||.||||
RBAM_008280__ 30 ACGGCCATTTTTTGTACTGGCACCAATGGAAGATGTGACGGATGTCGTTT 79
BSNT_01340___ 101 TCCGGCATGTAGTAAGTGAAGCAGGCAGACCGGATGTATTTTTTACAGAG 150
|.||.|||||.||.|||||||||||||||||.|||||.|||||.||||||
RBAM_008280__ 80 TTCGCCATGTTGTGAGTGAAGCAGGCAGACCTGATGTGTTTTTCACAGAG 129
BSNT_01340___ 151 TTCACAAACTCAGAGAGCTATTGCCACCCGGATGGGAAGGATAGTGTGCG 200
||.|||||||||||.||||||||.||||||||||||||||||||||||||
RBAM_008280__ 130 TTTACAAACTCAGAAAGCTATTGTCACCCGGATGGGAAGGATAGTGTGCG 179
BSNT_01340___ 201 TGGCCGTTTGACGTTTACAGAGGATGAACAGCCAATGGTAGCCCACATAT 250
.|||||||||||.||.||.||||||||||||||.|||||.||||||||||
RBAM_008280__ 180 CGGCCGTTTGACTTTCACGGAGGATGAACAGCCGATGGTTGCCCACATAT 229
BSNT_01340___ 251 GGGGGGATAAGCCTGAAAACTTCCGTAAAATGAGTATTGGCATGGCAGAG 300
||||.|||||||||||||||||.||..|||||||||||||.|||||.||.
RBAM_008280__ 230 GGGGAGATAAGCCTGAAAACTTTCGCCAAATGAGTATTGGGATGGCGGAA 279
BSNT_01340___ 301 TTAGGATTTAAAGGCTTAGATATCAATATGGGCTGCCCTGTACCTAATGT 350
|||||.|||||.|||.|.|||||||||||||||||.||||||||||||||
RBAM_008280__ 280 TTAGGGTTTAAGGGCCTGGATATCAATATGGGCTGTCCTGTACCTAATGT 329
BSNT_01340___ 351 GGCAGGGAATGGAAAGGGAAGCGGCCTTATTTGCCGTCCTGCAGTGGCGG 400
|||.|||||||||||||||||||||||.|||||||||||||.|||.||.|
RBAM_008280__ 330 GGCGGGGAATGGAAAGGGAAGCGGCCTGATTTGCCGTCCTGAAGTTGCAG 379
BSNT_01340___ 401 CAGAATTAATACAAGCTGCAAAAGCAGGGGGATTGCCTGTAAGCGTGAAG 450
|.|||||||||||.||.||.||||||||.||..||||.|||||.||||||
RBAM_008280__ 380 CCGAATTAATACAGGCGGCGAAAGCAGGAGGTCTGCCGGTAAGTGTGAAG 429
BSNT_01340___ 451 ACAAGACTTGGATACACGGATGTGGATGAATGGCGCGAGTGGCTGACACA 500
||.||||||||.|||||||||.|.||.||||||||||..|||||||||||
RBAM_008280__ 430 ACCAGACTTGGCTACACGGATATAGACGAATGGCGCGGCTGGCTGACACA 479
BSNT_01340___ 501 CATTTTGAAACAGGATATTGCGAATCTTTCTATTCATCTGCGTACAAGGG 550
|||..|||||||.||.||||||||||||||.|||||||||||||||||.|
RBAM_008280__ 480 CATACTGAAACAAGACATTGCGAATCTTTCCATTCATCTGCGTACAAGAG 529
BSNT_01340___ 551 CAGAAATGAGCAAAGTAGATGCGCATTGGGAGCTCATCCCGGAGATTAAG 600
|.||||||||.||||||||||||||||||||||||||||||||.||.|||
RBAM_008280__ 530 CGGAAATGAGTAAAGTAGATGCGCATTGGGAGCTCATCCCGGAAATCAAG 579
BSNT_01340___ 601 AAACTTCGTGATGAGGTGGCACCAGATACACTGTTGACAATCAACGGAGA 650
|||||||||||||||.|.||.||.|||||.||.|||||.|||||.||.||
RBAM_008280__ 580 AAACTTCGTGATGAGATAGCGCCGGATACCCTATTGACGATCAATGGGGA 629
BSNT_01340___ 651 TATCCCTGACCGCCAAACCGGCTTGAAACTTGCTGAACAATACGGCGTCG 700
|||.||||||||..||||||||||||||||.||||||||||||||.||.|
RBAM_008280__ 630 TATTCCTGACCGTGAAACCGGCTTGAAACTCGCTGAACAATACGGTGTTG 679
BSNT_01340___ 701 ATGGCATTATGATAGGGCGCGGTATTTTTACAAATCCATTTGCCTTTGAA 750
|.||.||||||||.||.||.||.||||||||.||||||||.|||||||||
RBAM_008280__ 680 ACGGGATTATGATTGGACGAGGCATTTTTACTAATCCATTCGCCTTTGAA 729
BSNT_01340___ 751 AAGGAGCCGAAAGAGCATAGCAGCAAGGAATTGCTTGATCTCTTAAGGCT 800
||||||||||.||||||||||||.|||||||||||||||||.||.||..|
RBAM_008280__ 730 AAGGAGCCGAGAGAGCATAGCAGTAAGGAATTGCTTGATCTTTTGAGATT 779
BSNT_01340___ 801 GCATCTGGATCTTCATGAGAAATATTCAGCATTAGAAGCCCGTCCGTACA 850
|||.||||||||||||||..||||||||..|..||||||.||..|.||.|
RBAM_008280__ 780 GCACCTGGATCTTCATGATGAATATTCAAAAGCAGAAGCTCGAGCATATA 829
BSNT_01340___ 851 AGCCTCTTCCTCGCTTTTTCAAAATTTATCTCCGCGGGTTCCGAGGGGCA 900
|.||.||.||.|||||||||||.||.|||||||||||.|||||.||.|||
RBAM_008280__ 830 AACCGCTACCCCGCTTTTTCAAGATATATCTCCGCGGATTCCGTGGAGCA 879
BSNT_01340___ 901 AGTGAATTAAGAAATCAATGCATGAACACAAAGTCAACAGATGAAGTGCG 950
||||||||||||||||||||||||||.|||||||||||||||||||||||
RBAM_008280__ 880 AGTGAATTAAGAAATCAATGCATGAATACAAAGTCAACAGATGAAGTGCG 929
BSNT_01340___ 951 TGCATTGCTCGACGACTTTGAGAGAAAGTATCTTGATGGGGTAGAATAA- 999
||||||||||||.|||||||||||||||||||||||||||.|.||..||
RBAM_008280__ 930 TGCATTGCTCGATGACTTTGAGAGAAAGTATCTTGATGGGATGGAGCAAG 979
BSNT_01340___ 999 ----- 999
RBAM_008280__ 980 AGTGA 984
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