Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01333 and RBAM_008210
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:02
# Commandline: needle
# -asequence dna-align/BSNT_01333___yfjR.1.9828.seq
# -bsequence dna-align/RBAM_008210___yfjR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01333___yfjR-RBAM_008210___yfjR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01333___yfjR-RBAM_008210___yfjR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01333___yfjR
# 2: RBAM_008210___yfjR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 878
# Identity: 681/878 (77.6%)
# Similarity: 681/878 (77.6%)
# Gaps: 34/878 ( 3.9%)
# Score: 2631.5
#
#
#=======================================
BSNT_01333___ 1 TTGAAAATTGCTGTCATCGGACTCGGCAATATGGGACAGCCCATTGCCCG 50
.||||.||.||..||.|||||||||||||||||||.|..|||||.|||..
RBAM_008210__ 1 ATGAAGATCGCCATCGTCGGACTCGGCAATATGGGCCGCCCCATCGCCGA 50
BSNT_01333___ 51 AAATGTTCTTCAAGCAGGCTACGAATTGACTGTCTATAACCGGACGAAAC 100
||||.|..|..||||.||.|||....|||||||.|||||||||||||||.
RBAM_008210__ 51 AAATATCATGAAAGCCGGATACAGCCTGACTGTATATAACCGGACGAAAG 100
BSNT_01333___ 101 AAAAGACAGAAGAACT--TGTCACAG---AAGGCGCACAGGCAGCTGATA 145
||||..|.|..||.|| || | ||||.|||.|....||.||.|
RBAM_008210__ 101 AAAAAGCGGCTGACCTGCTG-----GATAAAGGGGCAGAATATGCCGAAA 145
BSNT_01333___ 146 CGCCGCGGCTGGCGGC--AAAGTCCGCTGATATTGTCATCACAATGCTTG 193
||||.||.|.|||.|| ||..| ||.||.||.||..|..|.|||||..
RBAM_008210__ 146 CGCCCCGACAGGCAGCTGAACAT--GCGGACATCGTGCTGTCCATGCTGT 193
BSNT_01333___ 194 CAGATGATGATTCTGT--CAGCACCGTGACATTCGGAGAAGACGGGCTGC 241
||||.|||||..|.|| ||| .||||||.||||||| |..||.||
RBAM_008210__ 194 CAGACGATGACGCCGTAACAG--ACGTGACTTTCGGAG----CTTGCGGC 237
BSNT_01333___ 242 ----TTGAAGGATTAGCAGAGAACGGCATTCACATCTCGATGAGCACAAT 287
|||..||.|||.|.||.|||||||||||.||.||.||||||||.||
RBAM_008210__ 238 ATTATTGCCGGGTTATCTGAAAACGGCATTCATATTTCAATGAGCACGAT 287
BSNT_01333___ 288 CAGTGTTGAGTTCTCAGAAAAGCTCGCAGCGGCTCAT----GCAGAGAAA 333
||||...|.|.|.||.|||.||||..|.||.||.||| |||| |
RBAM_008210__ 288 CAGTACGGCGCTGTCTGAACAGCTTTCCGCCGCACATTCGGGCAG----A 333
BSNT_01333___ 334 GGACAATTTTTTCTCGCCGCTCCTGTCCTTGGCAGACCGGATGCCGCAGC 383
||.||.|..|||.|.||||||||.|||||.|||.|.||.||||||||.|.
RBAM_008210__ 334 GGGCAGTCCTTTATTGCCGCTCCCGTCCTCGGCCGCCCCGATGCCGCCGA 383
BSNT_01333___ 384 CAAAGCCGCGCTCCGTATCATAACAGCCGGACCGGCGGAAGCAAAGCAAG 433
.||.||||.|||.||.|||||.||||||||||||||.|||||.|||.||.
RBAM_008210__ 384 GAAGGCCGAGCTTCGCATCATCACAGCCGGACCGGCAGAAGCGAAGAAAA 433
BSNT_01333___ 434 CTGCCAAGCCTCTGCTCGACAGCCTGAGCCAGCAGGTATTTGACGTCGGC 483
..|||.|.||.|||||..|||.||||||.|||||.|||||||||...||.
RBAM_008210__ 434 AGGCCGAACCGCTGCTTAACATCCTGAGTCAGCAAGTATTTGACACTGGT 483
BSNT_01333___ 484 GAAGAAAGCAAGACGGCAAATGCAGCCAAAATCAGCATCAATTTCTTGCT 533
|||||||..||.|||||.|||||.||.|||||||||.|||||||||||||
RBAM_008210__ 484 GAAGAAACAAAAACGGCCAATGCCGCGAAAATCAGCGTCAATTTCTTGCT 533
BSNT_01333___ 534 CGTGTCCATGCTGGAGGCGTTATCTGAATCCTTCTTAATGATGGAGAAAT 583
|||.||.|||||||||||||||||||||||.|||||||||||||||||.|
RBAM_008210__ 534 CGTTTCTATGCTGGAGGCGTTATCTGAATCATTCTTAATGATGGAGAAGT 583
BSNT_01333___ 584 ACGGCTTAGAACAAAAACAATTTTTAGAAATCGCCAGCGCGCTCTTTGGT 633
||||..||||.||||||||||||||||||||||||.|||||||||||||.
RBAM_008210__ 584 ACGGGCTAGAGCAAAAACAATTTTTAGAAATCGCCGGCGCGCTCTTTGGC 633
BSNT_01333___ 634 TCTCCAGTCTATCAAAATTACGGAACCATTATGGCCGAGCAGAAATTTGA 683
|||||.|||||||||||||||||||||||.|||||.||||||||||||||
RBAM_008210__ 634 TCTCCCGTCTATCAAAATTACGGAACCATGATGGCTGAGCAGAAATTTGA 683
BSNT_01333___ 684 GCCGGCCGGCTTCAAAATGTCTTTAGGGCTGAAGGATACCAACCTGGCAC 733
|||||||||.||||||||||||||||||||||||||||||||.|||||.|
RBAM_008210__ 684 GCCGGCCGGTTTCAAAATGTCTTTAGGGCTGAAGGATACCAATCTGGCGC 733
BSNT_01333___ 734 TCGCCGCCGCAAAACGGGTTTCTGCAAATCTTCCTCTTGCCGAGCTGGCC 783
|||||||||||.|||.||||||.|||||.||.|||||||||||.||||||
RBAM_008210__ 734 TCGCCGCCGCAGAACAGGTTTCCGCAAAACTCCCTCTTGCCGAACTGGCC 783
BSNT_01333___ 784 AAGAGCCATTTTGAAAACGGGATTGAGAAAGGCTTCGGGGATCTGGACTG 833
||||||||||||||||.||||||.|...|||||||||||||||||||.||
RBAM_008210__ 784 AAGAGCCATTTTGAAAGCGGGATCGCACAAGGCTTCGGGGATCTGGATTG 833
BSNT_01333___ 834 GGCCGCACTGATTAAATGTATAAAATAA 861
||||||..||||||||||..|.||||||
RBAM_008210__ 834 GGCCGCTTTGATTAAATGCCTGAAATAA 861
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